Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0607 ATGGGGAGGCCACCTTGCTGTGACAAGATCGGGGTGAAGAAAGGGCCATGGACTCCTGAAGAGGACATCATCTTGGTCTCTTACATTCAAGAACATGGTCCAGGGAATTGGAGAGCAGTTCCTACTAGCACAGGTCTGCTTAGATGCAGTAAGAGTTGCAGGCTTAGATGGACTAATTATCTCCGCCCGGGTATCAAACGCGGTAACTTTACTGATCAGGAGGAGAAGACGATAATCCACCTCCAGGCTCTTTTGGGCAATAGATGGGCTGCCATAGCTTCTTATCTTCCTCAAAGAACGGACAATGATATAAAAAATTATTGGAACACCCATTTGAAAAAGAAGCTGAAGAAGTTTCCCACAGGTGTAGATGACCATAATCAAGATGGGTTTTCAATCTCCAAAGGTCAGTGGGAGAGAAGGCTTCAAACAGACATCCACATGGCTAAACAAGCGCTATGTGAGGCTTTGTCCATAGATACGTCAAGCTCGCTGCCTGACTTGAAGAGCTCTAACGGCTACAACCCTAACACCAGACCTGTCCAAGCATCTACATATGCATCCAGTGCTGAAAACATAGCCAAATTGCTGGAAGGTTGGATGAGAAATTCACCAAAATCAACTCGAACGAATTCTGAAGCTACTCAGAACTCCAAAAACTCCAGTGAAGGGGCAACTACACCAGATGCTCTTGACTCGTTGTTTAGCTTCAACTCTTCCAACTCTGATCTTTCTCTGTCTAATGATGAGACAGCAAATTTCACACCCGAAACCATTCTCTTCCAAGATGAAAGCAAGCCAAATTTGGAGACTCAAGTCCCTCTCACAATGATAGAGAAATGGCTCTTTGATGAAGGTGCTGCTACTCAAGAACAAGAAGACCTAATTGACATGTCACTAGAGGACACTGCTCAGCTCTTCTAG 924 0.4491 MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRAVPTSTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKTIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFPTGVDDHNQDGFSISKGQWERRLQTDIHMAKQALCEALSIDTSSSLPDLKSSNGYNPNTRPVQASTYASSAENIAKLLEGWMRNSPKSTRTNSEATQNSKNSSEGATTPDALDSLFSFNSSNSDLSLSNDETANFTPETILFQDESKPNLETQVPLTMIEKWLFDEGAATQEQEDLIDMSLEDTAQLF* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0607 307 Gene3D - 13 66 - -
Vvi17g0607 307 CDD SANT 69 112 IPR001005 -
Vvi17g0607 307 CDD SANT 16 61 IPR001005 -
Vvi17g0607 307 SMART sant 13 63 IPR001005 -
Vvi17g0607 307 SMART sant 66 114 IPR001005 -
Vvi17g0607 307 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi17g0607 307 FunFam MYB-related transcription factor 13 66 - -
Vvi17g0607 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vvi17g0607 307 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 223 - -
Vvi17g0607 307 Gene3D - 69 130 - -
Vvi17g0607 307 MobiDBLite consensus disorder prediction 203 231 - -
Vvi17g0607 307 MobiDBLite consensus disorder prediction 200 231 - -
Vvi17g0607 307 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi17g0607 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vvi17g0607 307 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vvi17g0607 307 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi17g0607 307 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0607 Vvi-Chr17 6754149 6755658 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0607 1 307 MYB Transcription Factor Family AT5G62470 52.186 9.05e-117 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi17g0607 Myb_DNA-binding 1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0607 K09422 - vvi:100233018 605.905