Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0589 ATGGAAGGAGGTGATGAGCTCCACAGGCCAAATTTTCCATTCCAATTGCTAGAAAAGAAGGAAGAAGAAGCGTGCTCCAGCTCTGGTTATCCGTCTCTAGCCATATCATCTGCAGAACCCAACACCAACCGCTCTAATTCATCTCTACAAATCGCAGCGGAGCCTTCCAAAAAGCCGCCTCCCAAGAGGACTTCCACCAAGGATCGGCACACCAAAGTCGACGGACGTGGCCGCCGCATCCGCATGCCTGCACTCTGCGCTGCTAGGGTTTTTCAGCTAACGCGTGAGCTCGGCCATAAATCCGACGGCGAAACCATCGAGTGGCTGCTTCAACAGGCCGAGCCTGCCGTGATTGCCGCCACCGGAACCGGCACAATTCCTGCAAATTTTACGTCCCTTAACATCTCCCTCCGGAGCTCGGGCTCAAGCATGTCCGTCCCATCTCAACTAAGATCCACTTACTTCAATCCCAACTTCTCGGTCCCTCAAAGAAGAAGTCTTTTTCCGGGGCTATCATCGGAGAATTCTTCCACACTCGTTAATTTCCAATCTAACAATCTAAATTCCATGTTTCAAGCCAAGCAAGAGTTGAGAGACACTTCACTAGACCTATCGGAGACTGAGGAGAGCATAGGGAGGAAGAGGCGGCCGGAGCAGGATTTGTCGCAACAACAAATGGGAAGCTACTTGCTGCAGTCGAGCACCGGCTCCATCCCGGCCAGCCATGGTCAGATTCCGGCGAATTTTTGGATGCTCACTAATTCTAATAACCAAGTCATGAGTGCTGACCCTATATGGCCATTTCCTTCTGTTAATAACAGTAACTTATATAGGGGCACTATGTCCAGTGGGCTACATTTTATGAATTTTCCGACTCCTGTTGCCCTCTTGCCTAGCCAGCAGTTGAGCTCCGGCGGTGGAGGTGGCAGTGGTGGTGGCGGTGGTGGCGGCGGCAGTGGCATGGGCGAGGGTCACTTTAACATGCTGGCTGGACTAAACCCTTATCGGCCGGTGATGGGGAGTGGAGTGTCGGAATCTCAGGCAAGTGGGTCTCAGTCGCACCATGGAGGTGATGATCGACATGATGCAACCAGTCACCACTCATAG 1107 0.5239 MEGGDELHRPNFPFQLLEKKEEEACSSSGYPSLAISSAEPNTNRSNSSLQIAAEPSKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSTYFNPNFSVPQRRSLFPGLSSENSSTLVNFQSNNLNSMFQAKQELRDTSLDLSETEESIGRKRRPEQDLSQQQMGSYLLQSSTGSIPASHGQIPANFWMLTNSNNQVMSADPIWPFPSVNNSNLYRGTMSSGLHFMNFPTPVALLPSQQLSSGGGGGSGGGGGGGGSGMGEGHFNMLAGLNPYRPVMGSGVSESQASGSQSHHGGDDRHDATSHHS* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0589 368 MobiDBLite consensus disorder prediction 337 368 - -
Vvi17g0589 368 MobiDBLite consensus disorder prediction 299 325 - -
Vvi17g0589 368 MobiDBLite consensus disorder prediction 60 77 - -
Vvi17g0589 368 MobiDBLite consensus disorder prediction 20 77 - -
Vvi17g0589 368 MobiDBLite consensus disorder prediction 354 368 - -
Vvi17g0589 368 MobiDBLite consensus disorder prediction 29 53 - -
Vvi17g0589 368 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 42 359 IPR005333 GO:0003700
Vvi17g0589 368 ProSiteProfiles TCP domain profile. 66 120 IPR017887 -
Vvi17g0589 368 MobiDBLite consensus disorder prediction 199 220 - -
Vvi17g0589 368 MobiDBLite consensus disorder prediction 199 225 - -
Vvi17g0589 368 Pfam TCP family transcription factor 64 226 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0589 Vvi-Chr17 6588791 6589897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0589 5 368 TCP Transcription Factor Family AT1G69690 47.059 2.47e-68 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vvi17g0589 TCP 2.9e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0589 - - vvi:100245013 662.144