Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0587 ATGGATCCAGAGGTTCCGCCTTCCTTAGTTGACAAGGTCAATGTGGTGGCAGAGAATCCATTAACTAGGTCTTGTCCTACTAAAAACAATCAGAGAAAAGTTCCTAAAAGGGTTCACAAAGCCGTGAGAGAGAAACTGAAGCGGGAGCATTTGCATGACCTCTTTCTTGAGCTGGCCAATGCACTTGATTTAACTCATCAGAACACTGGAAAGGCCTTTATATTGTGTGAAGCTATTCGGCTAGTGAAGGACACAATTGCTCAGATTGATTGCCTCAAAAAGGAGAATGCAGCTCTGTTTTCTGAATCTCACTACGTGAACATTGAGAAGAATGAGTTGAGAGATGAGAATTCTGTCCTAGAAGATCAGATTGATAAACTTCAAACTGAGATCAAAGAGAGAGCAGCCCTGTATAAACCTGACCTCAACTCTGCTCCCTCCGAATTTCAGCAAACAGAAGTGACCCAACACTGTCCAGGAAGTTCCCTGAGATTTCCTTCTGCAGATCAAGCACTACAGCAATCATCTGTTGTGGGTCCTGTCCTTGTCGTCCCCTTCGCCTCTGGTCTCCGAGCTTATCCTGGGGCAGGCGCTCCCCGGTCAATCTCAATCGTGAGCAAGCCACATGCCAGGTATCCAACTCCAGGGGATTCGTGGCCCTCTCAAGTTTTAGGAGATCAGCCGACAGCCAGACAGAAATTTGAGCTTAGTGGTAGCATTAACAATAGCAGTAGTTGCGGCATTGGGGAAGAAGGCAGTGGTAAGGTGTGA 771 0.4669 MDPEVPPSLVDKVNVVAENPLTRSCPTKNNQRKVPKRVHKAVREKLKREHLHDLFLELANALDLTHQNTGKAFILCEAIRLVKDTIAQIDCLKKENAALFSESHYVNIEKNELRDENSVLEDQIDKLQTEIKERAALYKPDLNSAPSEFQQTEVTQHCPGSSLRFPSADQALQQSSVVGPVLVVPFASGLRAYPGAGAPRSISIVSKPHARYPTPGDSWPSQVLGDQPTARQKFELSGSINNSSSCGIGEEGSGKV* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0587 256 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 35 85 IPR011598 GO:0046983
Vvi17g0587 256 Coils Coil 110 137 - -
Vvi17g0587 256 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 33 101 IPR036638 GO:0046983
Vvi17g0587 256 PANTHER TRANSCRIPTION FACTOR BHLH47 1 245 - -
Vvi17g0587 256 MobiDBLite consensus disorder prediction 236 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0587 Vvi-Chr17 6557322 6561297 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0587 33 227 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 46.919 8.62e-52 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0587 - - vvi:100265609 498.819