Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0584 ATGGTCCACGTCTCCTTCTATCGCAACTATGGGAAGACTTTTAAGAAGCCCCGCCGTCCATACGAGAAGGAGCGGTTGGATGCTGAGCTGAAGCTGGTGGGAGAGTATGGGCTCCGGTGCAAAAGAGAGCTGTGGAGGGTTCAGTATGTTTTGAGCCGAATCCGTAATAATGCTAGGATGCTTTTGACCCTTGATGAGAAGAACCCTCGTCGGATCTTTGAGGGTGAAGCACTTCTTCGCCGTATGAACCGGTATGGGCTTTTGGATGAGAGTCAGAATAAGCTTGATTATGTCTTGGCATTGACCGTGGAGAACTTCCTTGAGCGCCGCCTTCAAACTCTTGTGTTCAAATCCGGTATGGCAAAGTCCATTCACCACGCCCGAGTGCTCATCAGGCAGAGGCATATCAGGGTGGGGAGGCAGGTTGTGAACATTCCCTCTTTCCTTGTGAGGATGGATTCACAGAAGCATATTGACTTCTCACTTACAAGTCCACTCGGAGGTGGGCGTCCCGGAAGGGTGAAGCGAAAGAACCAGAAGGCAGCTGCAAAGAAGGCTGCTGGTGGCGATGGAGATGAAGAAGATGAGGATTGA 594 0.5101 MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYVLSRIRNNARMLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFLVRMDSQKHIDFSLTSPLGGGRPGRVKRKNQKAAAKKAAGGDGDEEDED* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0584 197 Pfam S4 domain 109 151 IPR002942 GO:0003723
Vvi17g0584 197 FunFam 40S ribosomal protein S9 108 188 - -
Vvi17g0584 197 MobiDBLite consensus disorder prediction 161 197 - -
Vvi17g0584 197 SMART Ribosomal_S4_2 8 108 IPR001912 GO:0019843
Vvi17g0584 197 NCBIfam 30S ribosomal protein S4 11 166 IPR005710 GO:0003735|GO:0006412|GO:0015935
Vvi17g0584 197 ProSitePatterns Ribosomal protein S4 signature. 107 131 IPR018079 GO:0019843
Vvi17g0584 197 SUPERFAMILY Alpha-L RNA-binding motif 12 159 - -
Vvi17g0584 197 Gene3D - 108 166 IPR036986 GO:0003723
Vvi17g0584 197 Pfam Ribosomal protein S4/S9 N-terminal domain 8 108 IPR001912 GO:0019843
Vvi17g0584 197 PANTHER 30S 40S RIBOSOMAL PROTEIN 7 185 IPR022801 GO:0003735|GO:0015935|GO:0019843
Vvi17g0584 197 CDD S4 109 151 - -
Vvi17g0584 197 ProSiteProfiles S4 RNA-binding domain profile. 109 180 - -
Vvi17g0584 197 SMART s4_6 109 180 IPR002942 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0584 Vvi-Chr17 6500402 6505038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0584 1 187 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 90.374 2.57e-126 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0584 K02997 - vvi:100264515 358.992