Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0582 ATGTCTACCCAAAGAGCAAGAGCTTCACGAGTCACCGACGATGAGATTAACGACCTCATCCTCAAACTGCAGGCGTTGCTACCTCATTCAAATCAAAGGCGCACGTCTACAGGGGCATCGGCATGGAGGATTCTGAAAGAAACGTGCAGTTACATAAAGAGGCTACACAGAGAGGTGGGCGACCTGAGTGAGAGACTATCCCAGCTTCTTGATTCTCTTGATAATATTAATGGTGTTGAGGTTGAGCAACTTAGAAGTTTATTGCAGCGATAG 273 0.4652 MSTQRARASRVTDDEINDLILKLQALLPHSNQRRTSTGASAWRILKETCSYIKRLHREVGDLSERLSQLLDSLDNINGVEVEQLRSLLQR* 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0582 90 Pfam Helix-loop-helix DNA-binding domain 14 55 IPR011598 GO:0046983
Vvi17g0582 90 PANTHER DNA BINDING PROTEIN 1 89 IPR044172 -
Vvi17g0582 90 ProSiteProfiles RUN domain profile. 10 90 IPR004012 -
Vvi17g0582 90 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 14 71 IPR036638 GO:0046983
Vvi17g0582 90 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 55 IPR011598 GO:0046983
Vvi17g0582 90 Gene3D - 4 89 IPR036638 GO:0046983
Vvi17g0582 90 Coils Coil 52 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0582 Vvi-Chr17 6493136 6493937 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0582 1 88 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 50.538 4.28e-22 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi17g0582 HLH 3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0582 - - tss:122671228 100.523