Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0577 ATGTCTAGCAGAAGATCACGCTCAAGGCAATCCGGAGGTTCCAGGATCACGGATGACCAGATCAATGATCTGGTTTCCAAGTTGCAACAGCTTCTTCCTGAGATTCGAGGCAGGCACTCGGACAAGGTCTCGGCAGCTAAGGTCTTACAGGAGACATGCAACTATATTAGAAGCCTGAACAGAGAGGTTGATGACCTAAGTGAGCGATTGTCTGAGTTATTGGCAACAACAGACTCTGCCCAGGCAGCCATTATTAGGAGTCTACTTACGCAATAG 276 0.4819 MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRGRHSDKVSAAKVLQETCNYIRSLNREVDDLSERLSELLATTDSAQAAIIRSLLTQ* 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0577 91 Pfam Helix-loop-helix DNA-binding domain 19 59 IPR011598 GO:0046983
Vvi17g0577 91 PANTHER TRANSCRIPTION FACTOR PRE 1 89 IPR044293 GO:0006355|GO:0040008|GO:0046983
Vvi17g0577 91 FunFam Transcription factor ILI6 7 86 - -
Vvi17g0577 91 Gene3D - 15 87 IPR036638 GO:0046983
Vvi17g0577 91 Coils Coil 49 76 - -
Vvi17g0577 91 CDD bHLH_AtPRE_like 16 76 - -
Vvi17g0577 91 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 5 59 IPR011598 GO:0046983
Vvi17g0577 91 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 19 77 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0577 Vvi-Chr17 6455684 6456541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0577 1 91 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 71.739 1.74e-40 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi17g0577 HLH 3.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0577 - - vvi:100248549 163.696