Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0576 ATGGTTGTTGCTGTCAAGAAGCTCATACCTGCAGGTTTCCAGGGTCACAAAGAGTGGCTAGCTGAAGTTAATTTTCTCGGCCAGCTGCAACATCCAAACCTCGTCAAGCTACTTGGGTACTGCTTAGAAGGGGAGGACCGGCTTTTGGTCTATGAATTCATGGCCAGAGGCAGCTTGGAGAATCATCTGTTTAGAAGAACAGTCCCACCACTTTCTTGGGAAACAAGGATTAAGGTTGCTGTGGGGGCTGCTCGAGGGCTTGCCGTCCTGCATAACTCCCAGCCAGAAATAATCTACCGTGATTTCAAAGCTTCAAATATTTTGTTGGATTCGGAGTTCAATGCGAAGCTATCAGACTTTGGATTGGCAAAGGAAGGACCAACTGGTGATCGGACTCATGTTTCCACTCAAGTGTTTGGAACACAGGGCTATGCTGCACCTGAATACATAGCTACAGGTCATCTATCGACCAGGTGCGACATCTACAGCTTTGGGGTTGTGTTGCTCGAAATACTGTCAGGACGGCGTGCAATAGATAAGACAAAACCTCGTGCCGAAGAGAAATTAGTAAGCTGGGCAAGACCCTACTTGAATGACAAGAAAATGTTTTATCGAATTATGGATAGCAGGATGGAGGGTGGGTACCCAAAAACCGGTGCTTATATTGCTTCAACTCTGGCACTACAGTGTGTCTGTCATGCCAAAAATCGGCCAACAATGAGTGAAGTTGTGAAAATTCTTGAACGGATCTTGGCTGCCACAGACACTGCAGGACCATCCCAATCTGCGCAGCAATCAGCACCTAGTCCTGTTGGCAGGTCCACGGTGGGAAGCAGTAACCCTTCACCTCATCCTCAATCCCCCGCAGAATCCCCATCACCTGCCCATTCTCCTCAGCCTCCCCAACAGCTAGGATGA 918 0.4847 MVVAVKKLIPAGFQGHKEWLAEVNFLGQLQHPNLVKLLGYCLEGEDRLLVYEFMARGSLENHLFRRTVPPLSWETRIKVAVGAARGLAVLHNSQPEIIYRDFKASNILLDSEFNAKLSDFGLAKEGPTGDRTHVSTQVFGTQGYAAPEYIATGHLSTRCDIYSFGVVLLEILSGRRAIDKTKPRAEEKLVSWARPYLNDKKMFYRIMDSRMEGGYPKTGAYIASTLALQCVCHAKNRPTMSEVVKILERILAATDTAGPSQSAQQSAPSPVGRSTVGSSNPSPHPQSPAESPSPAHSPQPPQQLG* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0576 305 MobiDBLite consensus disorder prediction 285 305 - -
Vvi17g0576 305 ProSiteProfiles Protein kinase domain profile. 1 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0576 305 Pfam Protein tyrosine and serine/threonine kinase 2 246 IPR001245 GO:0004672|GO:0006468
Vvi17g0576 305 Gene3D Transferase(Phosphotransferase) domain 1 55 268 - -
Vvi17g0576 305 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 54 261 - -
Vvi17g0576 305 PIRSF ILK 1 259 - -
Vvi17g0576 305 MobiDBLite consensus disorder prediction 256 284 - -
Vvi17g0576 305 SUPERFAMILY Protein kinase-like (PK-like) 2 284 IPR011009 -
Vvi17g0576 305 PANTHER OS01G0588500 PROTEIN-RELATED 2 250 - -
Vvi17g0576 305 MobiDBLite consensus disorder prediction 256 305 - -
Vvi17g0576 305 Gene3D Phosphorylase Kinase; domain 1 1 54 - -
Vvi17g0576 305 ProSitePatterns Serine/Threonine protein kinases active-site signature. 97 109 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0576 Vvi-Chr17 6427858 6430258 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0576 1 255 Glycoside Hydrolase AT3G07070 53.282 2.63e-91 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vvi17g0576 PK_Tyr_Ser-Thr 1.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0576 - - vri:117904645 558.525