Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0573 ATGGCGGATTCATCCTCCGGTCCCGCGAGCTTCTGGACCCAAGCCAACGCTTTGCTCAGAAAGAACTTAACCTTCCAGAAACGAAATATCAGGACAAATATTCGGCTCGTTTCATTCCCTATTTTACTCTGTGTGCTACTTGTTGTCATCCAAAAATTGGTCAACAGTGAATTGGATAAAGCTGAGAACAAGTGTGGCTGCATTTCTGTTACCAATGAAAATGGTCAAACTGAAAAGAGGTGTGGGATTCAGTACTCAACTCTGGATCAGGTGGGCACTTGTCCCATTCCTAGCCCTCCAGAATGGCCTGCATTATTACAAGTACCAGCTCCTGAATATCGTGCAGTGAGAGCCGATTTTATTCAATTTACAGATTTGCCAGATGACTCATGCAGGAGGACAGGGTCATGTCCTGCAACTATACTTTTCACTGGGAATAATCGATCTCTTGGATTAACTTTGGCTGGGAACATGTTCTCGAGTTCTTCCTCTCTAAATTCCTCCAATATTCTGGGTAATTTATCCAATTTTGTGCTTGGATCTGAATCAATGCCTGAGACGACCAATTTTCTTGATCCTGCTTTCTTCTCGGATCTTCCCATATATCATGTTGAACCTCAGTGTGCACCAAACTCAACATTTTCAGTGTCCTTCTCCTTAGCATCCACTAATGTGCAGCAAGAGATACAATGTGTTCAAGGCTTACATTTGTGGCGTAATAGTTCTTCTGAGATTAATGATGAGCTGTTTAAGGGTTACCACAAAGGGAATTCAGAGAGGAAGATAAATGAGATTGTTGCAGCATATGATTTCTTAAATTCGAACGGGAATAATTTTAATGTGAGTATATGGTACAATTCAACATACAAGAATGACGCAGGTGCTAGTTCTATCGCATTAGTGAGGGTTCCACGCTCAGTGAATCTGGCATCCAATGCCTACCTGCAGCTTGTGCAAGGAGATGGTGTCAAAATGGTACTTGACTTCATTAAAGAAATGCCCAAACCTGAAACCCAAGTCAGGCTGGATTTATCTTCTGTTCTTGGTACACTCTTCTTTACGTGGGTCATTTTGCAACTGTTCCCTGTTGTGTTGACATCTCTGGTTTATGAGAAGCAACAAAATCTAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGGCCTTATTGGATGATTTCCTATGCTTATTTTCTTGTCATATCTTCAATCTACATGTTATGTTTTGTGATATTTGGCTCAGTTATAGGTTTAAAATTCTTCACCTTGAATGACTACAGCATCCAACTTGTGTTTTACTTTATCTATATAAACTTGCAAATTTCACTGGCCTTTCTACTAGCTGCTGCATTTTCAAACGTTAAGACTGCCACAGTTTTAGGATACATATGTGTCTTTGGAACAGGACTCTTAGGAGGCTTTCTTTTCCAGTTCTTTATTCAAGATACATCATTCCCGAATGGCTGGATTATAGTTATGGAGTTATATCCTGGTTTTTCTCTATATCGGGGTTTATATGAGTTTGCACAGTACTCTTTCACAGGGAATTATATGGGGACTGATGGGATGCGATGGGGAGATCTGAGTGATAGCACAAATGGGATGAGAGATGTCTTGATCATCATGTTTGTGGAATGGTTGATAGTGCTTTTTGTTGCATACTATATAGACCAAGTTTTATCATCAGGGAATGGTGTTAAAAGAAGTCCTCTATTTTTCTTGCAAAACTTTCGGAAAAAAAAGCCTATGTCATCTTTCCGGAAGCCTAGTTTGAAAAGGCAGGGATCCAAAGTTTTTGTTAAGATGGAGAAAGCTGATGTTTCTCAAGAGAGGGAGAAGGTTGAACAGCTGCTACTTGAATCTGGTGCAAATCATGCCATCATCTGTGATAACCTCAGAAAGGTGTATCCAGGAAGGGATGGAAACCCCGAAAAAATTGCAGTGAAAGGATTGTCTCTTGCTTTGTCTCATGGGGAGTGCTTTGGTATGCTTGGTCCCAATGGTGCAGGCAAAACCTCTTTCATTAGTATGATGATTGGGCTCACAGTACCAACCTCCGGCACAGCGTTTGTTGAGGGTCTGGACATACGAATTGATATGGATGGAATATATACCAGCATGGGTGTATGCCCACAACATGATCTTCTCTGGGAAACACTAACAGGAAGAGAGCACCTGCTATTTTATGGAAGACTTAAAAACCTCAAAGGTGCTGCCTTAACACAAGCAGTGGAAGAATCTCTTAAGAGTGTCAACCTATTTCATGGAGGGGTTGGGGACAAGCAGGCTGGAAAATACAGTGGAGGAATGAAGAGGAGGCTTAGTGTTGCCATTTCACTGATTGGAGATCCCAAAGTTGTCTATATGGATGAACCGAGTACCGGATTAGATCCAGCTTCAAGAAACAACTTGTGGAATGTTGTGAAGCGTGCAAAGCAAGGCCGAGCAATAATTCTAACAACGCATTCAATGGAGGAGGCAGAGGTTCTATGTGACCGACTAGGAATTTTTGTGGATGGCAGCCTGCAATGTATTGGAAACCCAAAAGAGCTGAAGGCTAGATATGGAGGGTCTTATGTGTTTACAATGACAACATCTTCGAATCATGAGGAAGAAGTGGAGAACTTGGTGCGGCAACTCTCCCCAAACACTAACAAAATATACCAAATTTCTGGAACCCAGAAGTTTGAGCTTCCAAAGCAAGAGGTCAGGATTGCAGATGTTTTCCAAGCAGTTGAGAATGCAAAGAGCAGGTTCACAGTTCAAGCATGGGGTCTGGCTGACACCACTTTAGAGGACGTGTTCATCAAGGTTGCACGCGGAGCCCAGGCATTCGATGTGCTCTCTTGA 2850 0.42 MADSSSGPASFWTQANALLRKNLTFQKRNIRTNIRLVSFPILLCVLLVVIQKLVNSELDKAENKCGCISVTNENGQTEKRCGIQYSTLDQVGTCPIPSPPEWPALLQVPAPEYRAVRADFIQFTDLPDDSCRRTGSCPATILFTGNNRSLGLTLAGNMFSSSSSLNSSNILGNLSNFVLGSESMPETTNFLDPAFFSDLPIYHVEPQCAPNSTFSVSFSLASTNVQQEIQCVQGLHLWRNSSSEINDELFKGYHKGNSERKINEIVAAYDFLNSNGNNFNVSIWYNSTYKNDAGASSIALVRVPRSVNLASNAYLQLVQGDGVKMVLDFIKEMPKPETQVRLDLSSVLGTLFFTWVILQLFPVVLTSLVYEKQQNLRIMMKMHGLGDGPYWMISYAYFLVISSIYMLCFVIFGSVIGLKFFTLNDYSIQLVFYFIYINLQISLAFLLAAAFSNVKTATVLGYICVFGTGLLGGFLFQFFIQDTSFPNGWIIVMELYPGFSLYRGLYEFAQYSFTGNYMGTDGMRWGDLSDSTNGMRDVLIIMFVEWLIVLFVAYYIDQVLSSGNGVKRSPLFFLQNFRKKKPMSSFRKPSLKRQGSKVFVKMEKADVSQEREKVEQLLLESGANHAIICDNLRKVYPGRDGNPEKIAVKGLSLALSHGECFGMLGPNGAGKTSFISMMIGLTVPTSGTAFVEGLDIRIDMDGIYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLKGAALTQAVEESLKSVNLFHGGVGDKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEVLCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTTSSNHEEEVENLVRQLSPNTNKIYQISGTQKFELPKQEVRIADVFQAVENAKSRFTVQAWGLADTTLEDVFIKVARGAQAFDVLS* 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0573 949 FunFam ABC transporter A family member 7 616 892 - -
Vvi17g0573 949 Gene3D - 618 894 IPR027417 -
Vvi17g0573 949 SMART AAA_5 657 840 IPR003593 GO:0016887
Vvi17g0573 949 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 627 864 IPR003439 GO:0005524
Vvi17g0573 949 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 586 943 IPR026082 GO:0016020|GO:0055085|GO:0140359
Vvi17g0573 949 Pfam ABC transporter 649 793 IPR003439 GO:0005524
Vvi17g0573 949 Coils Coil 600 620 - -
Vvi17g0573 949 ProSitePatterns ABC transporters family signature. 766 780 IPR017871 GO:0005524|GO:0016887
Vvi17g0573 949 CDD ABC_subfamily_A 627 852 - -
Vvi17g0573 949 Pfam ABC-2 family transporter protein 198 554 IPR013525 GO:0016020|GO:0140359
Vvi17g0573 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 626 855 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0573 Vvi-Chr17 6396683 6408410 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0573 636 875 Calmodulin-binding Proteins AT2G36910 23.387 1.56e-12 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0573 - - vvi:100253652 1862.81