Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0570 ATGGGCAAATCACCAGGAAAATGGATCAAGACCCTACTTTTTGGAAAGAAAGCATCCAAATCTAATTTTTCAAAAGGAAGAGAGAAAGTTGCAAATGAGAGAGAAGTGTGGGTTGCTGCCAAGGCACCAGAAGCTGACTTGGGTTTGGATCCTCTTGTGGCATCAGAGGCTCCTAATATTATTGACAAAAATGAGATGTTAGAATTTGAGAACAGGGAAGCTTCTGCGGGTGGAATATTGTCTGGGGATCTGGATGCAGATATTCAAGGGTGCAGACAACTCAGTACACTAAATAATCCTGAAAGGATAAGACAGGAGCGAGCTGCTACAAAGGCCCAGGCTGCTTTTAGGGGTTATCTGGCTCGCCGTGCATTTCGGGCCCTCAAAGGGATAATAAGGTTGCAGGCTCTTATCCGTGGCCACTTGGTGAGGAGACAAGCTATTTGTACCTTATACTGTATGCTGGGAATTGTCAAGATACAGGCCCTTGCTCGTGGAAGAAGGATCAGGCATTCTGAACTTGGCCTCAGAGTCAATAAGAAATGCATTCAAGTGAAACCTCTGAAGGGCAAGCTTGGGGATCCTGCTGGAGTTAGCTCATCCACACAAATAGCAAAGCGAACCGCAAATGCTTTTGTTCATAAGCTTCTTGCTTCATCTCCCACTGTGATGCCTCTACACCTTCAATATGATTCTGCTGAACCAAATTCAGACTTCTATTGGTTGCAATGCTGGTCAGCATCCCACTTCTGGAAACCGATTCCCCAACCAAGGCAAGTTCCTGACTCAAAATCCCAGAAAAAGCAGGGTAACCCTCTAGCTATAGAAACTGAAACAGGTAGGCCCAAGCGCAGTGTCAGAAGGATCCCTGCTATGAATGTTGACAGTGTCTCAGCCCAATCAACCACTGAATTTGAGAAACCCAAGCGCAACTTCAAGAAACTTTCAAGCCGTCCAGCAGACCCAGTACTGGAACATCCACAAAATGAGCTTGAAAAAGTTAAACGTAATTTGAGAAAAGTTCATAACCCAGTTGTGGAGAGCTCTGCCCAGCCGGGCAATGAAACTGAGAAACCAAAGCAAAGTATGGAAAAGATGTCGAGCACTCCAGGACATGATGTTTTGGAGCAGAGCATGGGTGATTCTGCAGAGAAGATGAACATGGAGACACCTGTGACGGTGTCCAAACTGCCTGAAGTAGAAACAACAACAGAACCACCGGCGGTGATATGGGTGAATGAGGCATCGGATTCATTACACAATGATCAAACTGTAGTTGAGTTACAGCCGGTAGAGAACAGTGGAAAAGATGAAAATATTCCTGTGGCAAATGAGGAATTGAGCTCTAAGGAGGATGCTATTAGCAATGAAAACCAAAAATCAAGCAGGAAAGCTTCTATTCCAGCAAAGCCAGAACGTGCAGAAAATGGGCTAGAGAGCAGTCCAAAGTTGCCAAGCTATATGGCAACAACTCAATCTGCAAAGGCAAAGCTCCGAGCCCAAGGCTCCCCTCGGTTGGGGCAAGATGTGCCTGAGAAGAATAACATAACCAGGCGTCATTCTCTGCCCTCCTCTACTAATGGCAAAATGAACTCATTGTCACCGAAGACACAGAAACCGGTTCAAGGAAATGGCAAAGGAGGAAATAGAAGTGAGAGATCCATTTTGTCTTCAAAAGACGGAAATGCAAAGGTGGCAGTCCAAGCAGAGTGGAGAAGGTGA 1722 0.4564 MGKSPGKWIKTLLFGKKASKSNFSKGREKVANEREVWVAAKAPEADLGLDPLVASEAPNIIDKNEMLEFENREASAGGILSGDLDADIQGCRQLSTLNNPERIRQERAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAICTLYCMLGIVKIQALARGRRIRHSELGLRVNKKCIQVKPLKGKLGDPAGVSSSTQIAKRTANAFVHKLLASSPTVMPLHLQYDSAEPNSDFYWLQCWSASHFWKPIPQPRQVPDSKSQKKQGNPLAIETETGRPKRSVRRIPAMNVDSVSAQSTTEFEKPKRNFKKLSSRPADPVLEHPQNELEKVKRNLRKVHNPVVESSAQPGNETEKPKQSMEKMSSTPGHDVLEQSMGDSAEKMNMETPVTVSKLPEVETTTEPPAVIWVNEASDSLHNDQTVVELQPVENSGKDENIPVANEELSSKEDAISNENQKSSRKASIPAKPERAENGLESSPKLPSYMATTQSAKAKLRAQGSPRLGQDVPEKNNITRRHSLPSSTNGKMNSLSPKTQKPVQGNGKGGNRSERSILSSKDGNAKVAVQAEWRR* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0570 573 ProSiteProfiles IQ motif profile. 105 133 IPR000048 GO:0005515
Vvi17g0570 573 MobiDBLite consensus disorder prediction 306 329 - -
Vvi17g0570 573 SMART iq_5 104 126 IPR000048 GO:0005515
Vvi17g0570 573 SMART iq_5 127 148 IPR000048 GO:0005515
Vvi17g0570 573 PANTHER IQ-DOMAIN 5-RELATED 1 528 - -
Vvi17g0570 573 Pfam IQ calmodulin-binding motif 129 146 IPR000048 GO:0005515
Vvi17g0570 573 Pfam IQ calmodulin-binding motif 106 126 IPR000048 GO:0005515
Vvi17g0570 573 MobiDBLite consensus disorder prediction 347 375 - -
Vvi17g0570 573 ProSiteProfiles IQ motif profile. 129 156 IPR000048 GO:0005515
Vvi17g0570 573 MobiDBLite consensus disorder prediction 343 573 - -
Vvi17g0570 573 MobiDBLite consensus disorder prediction 416 430 - -
Vvi17g0570 573 MobiDBLite consensus disorder prediction 256 329 - -
Vvi17g0570 573 Pfam Protein of unknown function (DUF4005) 460 551 IPR025064 -
Vvi17g0570 573 MobiDBLite consensus disorder prediction 517 558 - -
Vvi17g0570 573 MobiDBLite consensus disorder prediction 483 498 - -
Vvi17g0570 573 Gene3D - 103 150 - -
Vvi17g0570 573 MobiDBLite consensus disorder prediction 259 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0570 Vvi-Chr17 6371527 6379065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0570 1 565 IQD Protein Family AT1G74690 48.241 3.52e-146 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0570 - - vvi:100263965 1134.78