Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0567 ATGAACAAGGAAGAAAGAGCTATGGAGGCCGCTTTGAGAAGATCTGGTCATGGGGTTGTTGTGAAGGAAGAGAGGAGACCTGAAGCACCATGCGATGACGATGAAGGTTGCAGAGACAAGGCTGCTGCCAAGGCTGATAAAACGAAGTCATCTTCCCCCAGACGCGAGGATTTAAACTGCAGTTCTGTGCAGTTACCAGCAATAAGTAAGATGGAAAGATCGATATCGTCTGCTGAACCGGACTCAGGAGCGAGTTCCTCGAGCCACAAGGATCAGGATGATCAGCTTGAATCAGCCAAAGCTGAAATGGGCGAGGTGAGAGAAGAAAATCAAAGGCTAAGGATGTATTTAGATCAAATTATGAAGGATTACAAGACTCTTCAAATGCAATTCTACGACGTTGTCCGACAAGAAGCTAAGGAATCCACAGAAAAGGCGAGCATTTTACAAATTGAGGAACCCGAGTTTGTTTCCCTTAGCCTGGGAAGAGTTTCAAGTGACCCAAAAAAGGATGAAAAGAACAAAACTACTAGCAAAGTGGAGGATGACGGAGTCAAAGGCGGCCTTAGTCTCGGACTTGACTGCAAATTTGAAGTGCTGAATCCAAGCCCTGAGAATAGCTTTGGAGGACCAAAGGAAGCTGCCGGAGAGAGTTGGCCACCTAGTAAAAGCCTGAAGACAATGAGAACCGGAGATGATGAAATTTCACAACAGAACCCCGCGAAGAGGTGTAGGGTTTCTGTGAGAGCTAGATGTGATACCCCAACGATGAATGATGGATGTCAATGGAGGAAATATGGGCAGAAGATTGCAAAAGGAAACCCATGTCCACGAGCATACTATCGCTGCACAGTTGCACCATCTTGCCCAGTTAGAAAACAGGTACAAAGATTTGCTGAAGACATGTCCATCTTGATTACCACCTATGAAGGGACACACAACCATCCACTCCCTTACTCAGCCACTGCAATGGCTTCCACCACTTCAGCAGCTGCTTCCATGCTCATGTCCGGCTCCTCGAGCTCTCAATCTGGCTCTGGCTCCTGCCCGTTATCAGCCACTAGTGCTGATCTCCATGGGGTGAACTTTTATCTATCTGACAACTCAAAATCAAAGCAATTCTACTCAATCAACTCGTCGCTCTCGGCTGTGTCTTCAAACCCAACAATTACACTTGACCTTACAACAGCCTCATCCTCTTCCTCTTCCTCATCCCATTTCAATAGGTTATCTTCAAATTATCCTCCCCCAAGATTTCCTTCTACAGGTTTCAACTTCAGTTCTTCTGAATCCAACTCTCTGCCTATCTCCTGGAGCAATGGATTGCTTAGCTATGGCAGTACTACTACTACTCAACCCTACAACAGGAACCATACTGGATCCCAAAATTCTGGACGACATACTCAGGAAAATTTCTTTCATCCCCACGTCCAAAAGAACAACCCAGCTCCTGTTCAACAGCCCCTACCAGATCCTATTGCAGCTGCAACAAAGGCAATCGCATCAGACCCGAGTTTCCAATCTGCTTTAGCAGCTGCCCTTACATCAATAATGGGTGCTAATGGTGGAACCCATGCTAACCATAGTGGAGGAGAGGCCTTTGGCCAGAAATTGATGTGGGGTAGTGAATCCCTTCCTGCTGTTTCTACCTATCAGTCAACCTCTAAAGGAAATGGATGTGCATCCAGCTACTTGAACAAATCGCCACCCACAAATTCTCAGCCGGGAAGCTTGATGTTTCTTCCTCCTGCATTGCCATTTTCCACCTCTAAGAATGCATCTGCATCCCCTGCTGAAAATAGAGAGCACACTAGTTGA 1818 0.4642 MNKEERAMEAALRRSGHGVVVKEERRPEAPCDDDEGCRDKAAAKADKTKSSSPRREDLNCSSVQLPAISKMERSISSAEPDSGASSSSHKDQDDQLESAKAEMGEVREENQRLRMYLDQIMKDYKTLQMQFYDVVRQEAKESTEKASILQIEEPEFVSLSLGRVSSDPKKDEKNKTTSKVEDDGVKGGLSLGLDCKFEVLNPSPENSFGGPKEAAGESWPPSKSLKTMRTGDDEISQQNPAKRCRVSVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPSCPVRKQVQRFAEDMSILITTYEGTHNHPLPYSATAMASTTSAAASMLMSGSSSSQSGSGSCPLSATSADLHGVNFYLSDNSKSKQFYSINSSLSAVSSNPTITLDLTTASSSSSSSSHFNRLSSNYPPPRFPSTGFNFSSSESNSLPISWSNGLLSYGSTTTTQPYNRNHTGSQNSGRHTQENFFHPHVQKNNPAPVQQPLPDPIAAATKAIASDPSFQSALAAALTSIMGANGGTHANHSGGEAFGQKLMWGSESLPAVSTYQSTSKGNGCASSYLNKSPPTNSQPGSLMFLPPALPFSTSKNASASPAENREHTS* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0567 605 Gene3D WRKY domain 242 319 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi17g0567 605 MobiDBLite consensus disorder prediction 86 110 - -
Vvi17g0567 605 MobiDBLite consensus disorder prediction 587 605 - -
Vvi17g0567 605 SMART WRKY_cls 257 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi17g0567 605 MobiDBLite consensus disorder prediction 549 605 - -
Vvi17g0567 605 MobiDBLite consensus disorder prediction 55 85 - -
Vvi17g0567 605 MobiDBLite consensus disorder prediction 549 578 - -
Vvi17g0567 605 MobiDBLite consensus disorder prediction 159 183 - -
Vvi17g0567 605 MobiDBLite consensus disorder prediction 449 469 - -
Vvi17g0567 605 MobiDBLite consensus disorder prediction 1 54 - -
Vvi17g0567 605 MobiDBLite consensus disorder prediction 1 110 - -
Vvi17g0567 605 ProSiteProfiles WRKY domain profile. 252 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi17g0567 605 SUPERFAMILY WRKY DNA-binding domain 250 318 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi17g0567 605 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 60 527 IPR044810 GO:0003700
Vvi17g0567 605 MobiDBLite consensus disorder prediction 204 240 - -
Vvi17g0567 605 MobiDBLite consensus disorder prediction 165 182 - -
Vvi17g0567 605 Pfam WRKY DNA -binding domain 258 316 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi17g0567 605 Coils Coil 89 116 - -
Vvi17g0567 605 FunFam probable WRKY transcription factor 31 242 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0567 Vvi-Chr17 6316168 6320034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0567 103 522 WRKY Transcription Factor Family AT5G15130 42.380 1.11e-87 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi17g0567 WRKY 8.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0567 - - vvi:100250047 1137.09