Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0560 ATGAGATTAGTAATTTTAATACCATTTTTGGTTATAGTTCCAGCCGTGACTGCCAACATAGGCGACTTCGATGAGGTGTGGCAAACTCGAGCGGAGGAAGCCAGAAAGGCCGCCCTCCAGGCCTATAACCCCCATCCAGAGAAAGTGACAGATAATTTCAACAAGAAGGTCCACAAGAGCTTTGATAGTACAAACCACACAAGGAGGAATTTGAGTAAATTTTCAGGACTATGCATGGCTACCAACCCAATCGACAGGTGCTGGAGATGCCGAAGTGACTGGGCTAGCAACCGCATGAAACTAGCTGATTGTGTGCTTGGGTTTGGGCAGAAGACAACTGGAGGCAAAGGTGGCAAAATTTATGTGGTGACGGATCCGTCTGACAATGACATGGTGAACCCCAAGCCCGGGACTTTACGTCATGCCGCGATCCAGGAGGAGCCACTTTGGATCATATTTGCCCATAGCATGGCAATCAGGCTAAATGAGGAGCTGATCATGACCAGTAATAAAACCATTGATGCCCGTGGAGCCAATGTGCACATTGCCAATGGTGCTGGCTTGACTCTGCAGTTTGTGCATAATATCATCATCCATGGCCTCCACATTCATGATATTAAGGTCGGCAATGGTGGCCTGATCCGGGACTCGGCCAGCCACTATGGCTTCCGCACAAGAAGCGATGGGGATGGTATATCGATTTTCGGGGCCACAAATATTTGGATTGATCATATTTCCATGTCGAATTGTGCTGATGGACTAATAGATGCCATCATGGCATCAACTGCTATTACCATCTCCAACTGCCATTTCACTCACCATAATGAGGTCATGTTGTTTGGTGCAAGCGACGGTTACTCCGGTGATGCAATCATGCAAATAACAATTACTTTCAACCACTTCGGCCAGGGGTTGACACAAAGGATGCCAAGATGCCGGTGGGGATTCTTCCATGTTGTCAACAATGACTACACACATTGGCTGATGTACGCCATAGGGGGTAGCCACCATCCTACCATACTCAGCCAGGGTAACCGATTCATCGCTCCTCCTGACATTAACTGTAAAGAGGTGACAAAGAGGGATTACTCACCTGAGAGTGTGTGGAAGAGTTGGACGTGGAGATCACAGGGGGATCTGATGATGAATGGGGCCTTCTTCGTTGAATCTGGAGACCCTAATTTTGATTTCTCAAACAAATATGTGATCAGGGCAAAACCTGGGGCATTTGTCACCAGGCTAACACGCTTTTCGGGTGCTCTTAGCTGCAGAGAAGGGATGCCATGTTAG 1290 0.4783 MRLVILIPFLVIVPAVTANIGDFDEVWQTRAEEARKAALQAYNPHPEKVTDNFNKKVHKSFDSTNHTRRNLSKFSGLCMATNPIDRCWRCRSDWASNRMKLADCVLGFGQKTTGGKGGKIYVVTDPSDNDMVNPKPGTLRHAAIQEEPLWIIFAHSMAIRLNEELIMTSNKTIDARGANVHIANGAGLTLQFVHNIIIHGLHIHDIKVGNGGLIRDSASHYGFRTRSDGDGISIFGATNIWIDHISMSNCADGLIDAIMASTAITISNCHFTHHNEVMLFGASDGYSGDAIMQITITFNHFGQGLTQRMPRCRWGFFHVVNNDYTHWLMYAIGGSHHPTILSQGNRFIAPPDINCKEVTKRDYSPESVWKSWTWRSQGDLMMNGAFFVESGDPNFDFSNKYVIRAKPGAFVTRLTRFSGALSCREGMPC* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0560 429 PANTHER PECTATE LYASE 18-RELATED 34 426 IPR045032 GO:0030570
Vvi17g0560 429 SMART amb_all 156 353 IPR002022 -
Vvi17g0560 429 SUPERFAMILY Pectin lyase-like 82 420 IPR011050 -
Vvi17g0560 429 Pfam Pectate lyase 166 347 IPR002022 -
Vvi17g0560 429 PRINTS Pollen allergen Amb family signature 164 180 IPR018082 -
Vvi17g0560 429 PRINTS Pollen allergen Amb family signature 228 249 IPR018082 -
Vvi17g0560 429 PRINTS Pollen allergen Amb family signature 104 121 IPR018082 -
Vvi17g0560 429 PRINTS Pollen allergen Amb family signature 330 349 IPR018082 -
Vvi17g0560 429 PRINTS Pollen allergen Amb family signature 308 327 IPR018082 -
Vvi17g0560 429 PRINTS Pollen allergen Amb family signature 128 153 IPR018082 -
Vvi17g0560 429 PRINTS Pollen allergen Amb family signature 372 396 IPR018082 -
Vvi17g0560 429 Pfam Pectate lyase, N terminus 19 71 IPR007524 GO:0030570
Vvi17g0560 429 Gene3D - 81 422 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0560 Vvi-Chr17 6216007 6217587 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0560 2 429 Polysaccharide Lyase AT3G01270 57.265 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0560 K01728 - vvi:100267345 896.345