Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0549 ATGGCGAGTGGGAGGGTCAATCTCGCAGCGATGCTTCAGAACCAAAGGGTCCCTTGTTCTTCTCAGCCTCTTGATGCTCTCTTCCTTTCTGCCTCTTCTCCTTCTTTTCTTGGTTCGAGATCCATGTTGAGCTTTGAAGATGTTCGTGCGGGAAAGAGACCCGATAATCCCTTCTTCTGCCAGTTTGATCATGATGAAAATGGAGACGAGGACTTGGATGAGTATTTCCACCAACCCGAAAAGAAAAGGCGACTTACAGCCGACCAAGTCCAGTTTCTCGAGAGGAATTTTGAGGTGGAGAACAAGCTTGAACCAGAAAGGAAAGTCCAGCTTGCAAAGGACCTTGGCTTACAGCCTCGGCAAGTTGCCATATGGTTTCAGAACCGCAGAGCGCGGTGGAAGACCAAACAGCTGGAGAAGGACTTTGGCGCCTTGCAAGCTAGCTATAACAGCCTTAAGGCTGAGTATGAAAACCTCCTAAAGGAGAAGGATGAACTAAAAACTGAGGTTATTCTCCTCACAGACAAACTGCTCGTCAAAGAGAAGGAGAGGGGAAACTTGGAGGTGTCTAATACTGACACCCTATCCCAAGAACTGCCTCAAGTGGTGGTTGCTGATTCGGTTTCTGAGGGTGAAGTATCCAAAGTCTCATTAGTGGTCTGCAAACAGGAAGATCTTAGTTCAACAAAAAGCGATGTATTTGATTCAGACAGTCCACATTATGCCGATGGGGGCCATTCCGCTCTTCCAGAGCCGGGCGATTCTTCTTATGTTTTTGAAGCTGACCAATCAGACGTGTCACAGGATGAAGAAGATAACTTCAGCAAAAGCCTGTTGCCTCCATCATACATCTTTCCAAAGCTTGAAGATGTTGATTACCCCGACCCTCCCACAAATCCTTGTAGTTTTGGATTCCCGGTTGAAGATCATGCCTTTTGGTCCTGGTCCTATTGA 954 0.4706 MASGRVNLAAMLQNQRVPCSSQPLDALFLSASSPSFLGSRSMLSFEDVRAGKRPDNPFFCQFDHDENGDEDLDEYFHQPEKKRRLTADQVQFLERNFEVENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDFGALQASYNSLKAEYENLLKEKDELKTEVILLTDKLLVKEKERGNLEVSNTDTLSQELPQVVVADSVSEGEVSKVSLVVCKQEDLSSTKSDVFDSDSPHYADGGHSALPEPGDSSYVFEADQSDVSQDEEDNFSKSLLPPSYIFPKLEDVDYPDPPTNPCSFGFPVEDHAFWSWSY* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0549 317 Pfam Homeobox associated leucine zipper 136 177 IPR003106 GO:0006355|GO:0043565
Vvi17g0549 317 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
Vvi17g0549 317 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 67 222 IPR045224 GO:0003700
Vvi17g0549 317 Coils Coil 142 176 - -
Vvi17g0549 317 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677
Vvi17g0549 317 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677
Vvi17g0549 317 SMART HOX_1 79 140 IPR001356 GO:0003677
Vvi17g0549 317 SUPERFAMILY Homeodomain-like 62 138 IPR009057 -
Vvi17g0549 317 MobiDBLite consensus disorder prediction 229 278 - -
Vvi17g0549 317 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Vvi17g0549 317 CDD homeodomain 81 137 IPR001356 GO:0003677
Vvi17g0549 317 Gene3D - 75 141 - -
Vvi17g0549 317 FunFam Homeobox-leucine zipper protein HAT5 74 138 - -
Vvi17g0549 317 Pfam Homeodomain 81 134 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0549 Vvi-Chr17 6134415 6136100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0549 18 315 Homeobox Transcription Factor Family AT3G01470 37.624 3.64e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vvi17g0549 Homeodomain 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0549 - - vvi:100260419 630.172