Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0543 ATGGGGTTGTGGATTTGGTTTTTCTCTGCAATATTGGGAGGAACCCTTTTGGGCCCTTGCTGTCTTGCTCTCTCTGAAGATGGTGTTACATTGTTGGAAATCAAGAGCCGTTTGAATGACAGTAGAAATTTTCTCGGTAACTGGAGGGATTCTGATGAGTTTCCATGTAAATGGACTGGTGTCTCTTGCTATCACCATGATCATCGAGTTCGTTCTATAAACCTACCTTACATGCAACTCGGGGGGATTATATCTCCAAGCATAGGCAAACTCAATAAATTACAAAGACTGGCACTTCACCAAAACAGCTTGCATGGGTCTATTCCTAACGAGATTGCCAATTGTGCTGAGCTCAGAGCCCTGTACTTGAGGGCCAATTATCTTCAAGGAGGCATACCGTCAGACCTTGGAAATCTTTCATATCTCACTATACTGGATTTCTCAAGCAATTCATTAAAGGGTGCCATACCATCCTCACTGGGTCGCCTCAAACGGCTGCGCTATTTGAACTTGTCTACAAACTTCCTTTCTGGTGAAATCCCAGATGTTGGAGTCCTAAGCACTTTTGACAACAAGTCTTTTATTGGAAATTTGGATTTGTGTGGTCAACAAGTGCACAAGCCATGTCGGACCTCACTGGGATTCCCTGCAGTGCTGCCCCATGCTGAAAGTGATGAAGCTGCAGTCCCTGTTAAACGATCAGCTCATTTCACCAAAGGTGTGTTGATTGGTGCAATGTCTACTATGGCTCTTGTGCTTGTCATGCTTCTTGCATTCCTCTGGATTTGTTTCTTATCAAAGAAAGAAAGAGCTTCCAGGAAATATACCGAAGTTAAAAAGCAAGTTCATCAAGAACCAAGCACCAAGCTTATTACTTTCCATGGTGATCTTCCATATCCCTCGTGTGAGATCATAGAGAAGCTGGAAGCTCTTGATGAAGAGGATGTTGTGGGTTCAGGGGGATTTGGTACTGTATATCGAATGGTCATGAATGACTGTGGTACATTTGCTGTGAAAAGAATTGATCGGAGTCGTGAAGGATCTGATAAAGTATTTGAGAGGGAGTTGGAGATCTTGGGTAGCATAAAGCACATAAATCTAGTTAACCTGCGAGGTTACTGCAGGCTTCCCACTTCAAAGCTGCTTATATATGATTATTTGGCTTTGGGCAGCTTAGATGATTTTTTGCATGAACATGGTGGACAAGATGAGCGGTCCCTTAATTGGAGTGCTCGTTTAAACATAGCCCTGGGTTCTGCCCGGGGGTTGGCATATTTGCATCATGATTGCAGCCCAAGGATAGTTCATCGTGACATAAAATCCAGCAACATACTCCTTGATGAAAATTTAGAGCCTCACGTTTCTGACTTTGGTCTTGCCAAACTTTTGGTAGATGAGGATGCGCATATCACGACTGTCGTTGCTGGCACTTTTGGCTATTTGGCACCAGAGTATCTGCAAAGTGGAAGAGCAACAGAGAAATCAGATGTCTATAGCTTTGGAGTTCTTTTGTTAGAGCTTGTCACTGGAAAGAGGCCTACTGATCCAACTTTCGTCAAGAGAGGTTTAAATGTTGTTGGCTGGATGAACACCCTATTGAAAGAGAATCGGTTGGAGGATGTAGTAGATAAAAGGTGCAGAGACGCTGAAGTTGAAACTGTAGAAGCAATTCTTGATATAGCGGGAAGGTGCACCGATGCAAACCCAGACGATCGGCCATCAATGAGCCAGGTGTTGCAGCTGCTAGAGCAAGAAGTTATGTCACCATGCCCCAGTGATTTCTATGAGTCCCATTCAGACTACTGTTAA 1809 0.4378 MGLWIWFFSAILGGTLLGPCCLALSEDGVTLLEIKSRLNDSRNFLGNWRDSDEFPCKWTGVSCYHHDHRVRSINLPYMQLGGIISPSIGKLNKLQRLALHQNSLHGSIPNEIANCAELRALYLRANYLQGGIPSDLGNLSYLTILDFSSNSLKGAIPSSLGRLKRLRYLNLSTNFLSGEIPDVGVLSTFDNKSFIGNLDLCGQQVHKPCRTSLGFPAVLPHAESDEAAVPVKRSAHFTKGVLIGAMSTMALVLVMLLAFLWICFLSKKERASRKYTEVKKQVHQEPSTKLITFHGDLPYPSCEIIEKLEALDEEDVVGSGGFGTVYRMVMNDCGTFAVKRIDRSREGSDKVFERELEILGSIKHINLVNLRGYCRLPTSKLLIYDYLALGSLDDFLHEHGGQDERSLNWSARLNIALGSARGLAYLHHDCSPRIVHRDIKSSNILLDENLEPHVSDFGLAKLLVDEDAHITTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPTFVKRGLNVVGWMNTLLKENRLEDVVDKRCRDAEVETVEAILDIAGRCTDANPDDRPSMSQVLQLLEQEVMSPCPSDFYESHSDYC* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0543 602 ProSitePatterns Protein kinases ATP-binding region signature. 317 339 IPR017441 GO:0005524
Vvi17g0543 602 Pfam Protein kinase domain 313 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0543 602 SUPERFAMILY L domain-like 23 200 - -
Vvi17g0543 602 Gene3D Phosphorylase Kinase; domain 1 270 386 - -
Vvi17g0543 602 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 186 - -
Vvi17g0543 602 SUPERFAMILY Protein kinase-like (PK-like) 293 583 IPR011009 -
Vvi17g0543 602 SMART serkin_6 311 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0543 602 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 71 584 - -
Vvi17g0543 602 Gene3D Transferase(Phosphotransferase) domain 1 387 591 - -
Vvi17g0543 602 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 387 593 - -
Vvi17g0543 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672|GO:0006468
Vvi17g0543 602 ProSiteProfiles Protein kinase domain profile. 311 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0543 602 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Vvi17g0543 602 Gene3D Ribonuclease Inhibitor 25 211 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0543 Vvi-Chr17 6076149 6081310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0543 23 591 Receptor kinase-like Gene Family AT2G35620 52.724 0.0 586
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Vvi17g0543 Pkinase 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0543 - - vvi:100253552 1207.97