Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0539 ATGGGGGTTGATTATTACAATATACTGAAAGTGAATAGGAACGCGAGCGAAGATGATCTAAGGAGGGCGTACCGGAGATTGGCAATGATTTGGCATCCGGATAAGAACCCTAGCAACAAGCGCGAGGCAGAGGCCAAGTTCAAGCAGATCTCCGAGGCTTACGACGTTCTCAGTGATCCTCAGAAGCGTCAGATCTACGATCTCTACGGTGAGGAGGCTCTCAAGTCCGGCCAAGTCCCTCCGCCCCCCGCCTCCACCCGAGGCGGTCCTCAGCACCACAATCACCACCCTAACCCATCCTTCAGGTTCAATCCTCGTGACGCTGATGATATATATGAAGAGTTTTTTGGGCCTGATGGAAGTGGCACCGGCGCCGGTGGGGGCGGTGGCGGGAGGAATAGGGTGTACAAGGATGGGTTTTTTAGGACTTCTAATGGGGATTATGGAAGTCAGGCTCTGCGGAAGGCGGCGCCGGTGGAGAACCTGTTACCGTGTAGTCTTGAGGAGCTTTACAAGGGGGCCAAAAAGAAGATGAAGATTTCGCGCACCATTTCCGATGCTTTCGGAAAGATTCGGACTGTGGAGGAGATATTATCCATTGACATTAAACCTGGTTGGAAGAAGGGGACAAAGATCACTTTCCCGGAGAAGGGTAACCAGGAGCCTGGTGTCATTCCAGCTGATCTTATTTTTGTGGTAGATGAGAAACCCCATCTAGTGTTTAAAAGGGATGGGAATGATCTGATAGTTGACCGGGAGATCACACTGCTGGAGGCGCTAACTGGTAAGGCCCTTGAGCTGAAAACCCTGGACGGAAGGAGTCTTGAGATCCAATTGACAGATATCGTCAAACCAGGCTATGAGATGGTTGTTCCAAATGAAGGAATGCCAATCTCAAAAGAACCCAGTAGGAAGGGAAACCTGAGGATCAAATTTGACGTCAACTACCCATCAAGGCTTACCTCAGAACAGAAATCTGATTTAAAGAGAGTATTGGGAGGAAGCTCATCATGA 1014 0.498 MGVDYYNILKVNRNASEDDLRRAYRRLAMIWHPDKNPSNKREAEAKFKQISEAYDVLSDPQKRQIYDLYGEEALKSGQVPPPPASTRGGPQHHNHHPNPSFRFNPRDADDIYEEFFGPDGSGTGAGGGGGGRNRVYKDGFFRTSNGDYGSQALRKAAPVENLLPCSLEELYKGAKKKMKISRTISDAFGKIRTVEEILSIDIKPGWKKGTKITFPEKGNQEPGVIPADLIFVVDEKPHLVFKRDGNDLIVDREITLLEALTGKALELKTLDGRSLEIQLTDIVKPGYEMVVPNEGMPISKEPSRKGNLRIKFDVNYPSRLTSEQKSDLKRVLGGSSS* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0539 337 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Vvi17g0539 337 PRINTS DnaJ domain signature 62 81 IPR001623 -
Vvi17g0539 337 PRINTS DnaJ domain signature 24 39 IPR001623 -
Vvi17g0539 337 PRINTS DnaJ domain signature 6 24 IPR001623 -
Vvi17g0539 337 PRINTS DnaJ domain signature 42 62 IPR001623 -
Vvi17g0539 337 SMART dnaj_3 3 62 IPR001623 -
Vvi17g0539 337 Pfam DnaJ domain 4 67 IPR001623 -
Vvi17g0539 337 CDD DnaJ 4 59 IPR001623 -
Vvi17g0539 337 Pfam DnaJ C terminal domain 163 317 IPR002939 -
Vvi17g0539 337 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Vvi17g0539 337 FunFam Dnaj homolog subfamily b member 155 236 - -
Vvi17g0539 337 Gene3D - 158 236 - -
Vvi17g0539 337 Gene3D - 238 318 - -
Vvi17g0539 337 FunFam DnaJ subfamily B member 13 3 126 - -
Vvi17g0539 337 FunFam DNAJ heat shock family protein 237 332 - -
Vvi17g0539 337 SUPERFAMILY Chaperone J-domain 3 73 IPR036869 -
Vvi17g0539 337 CDD DnaJ_C 163 320 - -
Vvi17g0539 337 Gene3D DnaJ domain 3 126 IPR036869 -
Vvi17g0539 337 SUPERFAMILY HSP40/DnaJ peptide-binding domain 163 238 IPR008971 GO:0006457|GO:0051082
Vvi17g0539 337 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 332 - -
Vvi17g0539 337 SUPERFAMILY HSP40/DnaJ peptide-binding domain 240 326 IPR008971 GO:0006457|GO:0051082
Vvi17g0539 337 MobiDBLite consensus disorder prediction 74 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0539 Vvi-Chr17 6022362 6029007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0539 5 74 C2H2 Transcription Factor Family AT1G74250 39.189 5.84e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0539 K09510 - vvi:100246709 645.966