Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0538 ATGGGTAACTGTATCGCATGCGTGAAGGTGGACTCTGCGGAAGACCACAGAAGCAACCACAGCAACAGCAACGGTCATAGGAGAAAGAAGAAGACCAAAGAACGTAGACCCAATCCATACGCCGACGACCAGGTCCGGTCTCCGGCGCCGATCCGGGTCCTGAAAGACGTGATTCCACTGAGTCACCGGACTCGGATCGGGGACAAGTACGTGCTGGGTCGCGAACTCGGCCGCGGCGAGTTCGGCATCACCTACCTCTGTACCGACCGCGAGACCCGTGATAGCCTTGCCTGCAAGTCCATATCCAAGAAGAAGCTGAGGACCGCTGTCGACATAGAGGACGTCAGGCGTGAGGTTTCTATAATGTCTAGTCTTCCCGATCACCCCAACATCGTGAAGCTCAAGGCCACCTACGAAGACAGCGAGGCCGTGCATCTGGTGATGGAGCTCTGCGAAGGAGGCGAGTTGTTCGATAGAATCGTCGCACGGGGGCACTACAGCGAGCGCGCTGCGGCCGGTGTGGCGCGGACGATAGCAGAGGTGGTGAGAATGTGTCACGAGAATGGAGTGATCCATAGAGACTTGAAGCCCGAGAATTTTTTGTTTGCGAATAAGCGGGAGAGTTCACCGCTTAAAGCCATTGATTTTGGGCTATCAGTGTTTTTCCGGCCTGGTGAAAGGTTCTCGGAGATTGTGGGGAGTCCGTACTATATGGCGCCTGAGGTTTTGAAGCGAAATTATGGGCCTGAAGTGGATATATGGAGTGCTGGAGTGATTCTTTATATTTTGCTATGTGGAGTTCCTCCATTTTGGGCAGAGACGGAACAGGGTGTTGCTTTGGCAATATTAAGGGGGGTGATTGATTTTAAGAGGGAACCTTGGCCGCAAATTTCTGATAATGCAAAGAGCCTTGTTAGGCAAATGTTGGAGCAGGATCCCAGAAAGCGGTTGACTGCTCAACAGGTGCTTGAACATTCCTGGTTACAGAATGCAAAGAAAGCTCCAAATGTTCCATTAGGAGATATTGTGAGAACAAGGCTCAAGCAGTTCTCTTGCATGAACAGATTCAAGAAGAAAGCCATGCGAGTAATTGCAGAGCACTTATCTGTTGAAGAAGTAGAAGTTATCAGAGATATGTTTACACTGATGGACACTGACAATGATGGAAAAGTAACATATGAAGAACTGAAGGCTGGACTTCGGAAGGTTGGTTCACAATTGGGTGAACCAGAGATAAAGTTGCTGATGGAAGTGGCTGATGTGGATGGGAATGGAGTCCTGGATTATGGAGAGTTTGTAGCAGTGACAATTCACTTGCAGAGGATGGAGAATGATGAGCATTTCCAAAGAGCTTTTATGTTTTTTGACAAAGATGGAAATGGGTTTATTGACTTAATCGAGCTACAAGAAGCCCTAGCAGATGAATCCGGTGAGACGGATGCTGATGTAGTGAATGAGATCATGCGGGAGGTCGACACAGACAAGGATGGGCGTATCAATTACGATGAGTTTGTGGCAATGATGAAAACTGGAACCGACTGGAGAAAGGCTTCTCGCCAGTACTCAAGGGAGAGGTTCAAAAGCCTGAGTCTCAACCTGATGAAGGATGGTTCTCTGCATCTTGAAGATAGGATTACGGGTCAATCTATTGCTGTCTGA 1659 0.4882 MGNCIACVKVDSAEDHRSNHSNSNGHRRKKKTKERRPNPYADDQVRSPAPIRVLKDVIPLSHRTRIGDKYVLGRELGRGEFGITYLCTDRETRDSLACKSISKKKLRTAVDIEDVRREVSIMSSLPDHPNIVKLKATYEDSEAVHLVMELCEGGELFDRIVARGHYSERAAAGVARTIAEVVRMCHENGVIHRDLKPENFLFANKRESSPLKAIDFGLSVFFRPGERFSEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVALAILRGVIDFKREPWPQISDNAKSLVRQMLEQDPRKRLTAQQVLEHSWLQNAKKAPNVPLGDIVRTRLKQFSCMNRFKKKAMRVIAEHLSVEEVEVIRDMFTLMDTDNDGKVTYEELKAGLRKVGSQLGEPEIKLLMEVADVDGNGVLDYGEFVAVTIHLQRMENDEHFQRAFMFFDKDGNGFIDLIELQEALADESGETDADVVNEIMREVDTDKDGRINYDEFVAMMKTGTDWRKASRQYSRERFKSLSLNLMKDGSLHLEDRITGQSIAV* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0538 552 Pfam EF-hand domain pair 374 435 IPR002048 GO:0005509
Vvi17g0538 552 Pfam EF-hand domain pair 446 509 IPR002048 GO:0005509
Vvi17g0538 552 ProSiteProfiles Protein kinase domain profile. 70 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0538 552 Gene3D Transferase(Phosphotransferase) domain 1 156 336 - -
Vvi17g0538 552 MobiDBLite consensus disorder prediction 15 46 - -
Vvi17g0538 552 ProSiteProfiles EF-hand calcium-binding domain profile. 407 442 IPR002048 GO:0005509
Vvi17g0538 552 Gene3D - 337 512 - -
Vvi17g0538 552 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Vvi17g0538 552 FunFam calcium-dependent protein kinase 13 156 336 - -
Vvi17g0538 552 FunFam Calcium-dependent protein kinase 1 72 155 - -
Vvi17g0538 552 ProSiteProfiles EF-hand calcium-binding domain profile. 371 406 IPR002048 GO:0005509
Vvi17g0538 552 FunFam Calcium-dependent protein kinase 7 337 512 - -
Vvi17g0538 552 SUPERFAMILY EF-hand 356 535 IPR011992 -
Vvi17g0538 552 SMART serkin_6 70 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0538 552 ProSiteProfiles EF-hand calcium-binding domain profile. 443 478 IPR002048 GO:0005509
Vvi17g0538 552 ProSitePatterns EF-hand calcium-binding domain. 384 396 IPR018247 -
Vvi17g0538 552 Pfam Protein kinase domain 70 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0538 552 SMART efh_1 447 475 IPR002048 GO:0005509
Vvi17g0538 552 SMART efh_1 411 439 IPR002048 GO:0005509
Vvi17g0538 552 SMART efh_1 483 511 IPR002048 GO:0005509
Vvi17g0538 552 SMART efh_1 375 403 IPR002048 GO:0005509
Vvi17g0538 552 CDD STKc_CAMK 69 327 - -
Vvi17g0538 552 ProSitePatterns EF-hand calcium-binding domain. 420 432 IPR018247 -
Vvi17g0538 552 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Vvi17g0538 552 PANTHER SERINE/THREONINE-PROTEIN KINASE 63 504 - -
Vvi17g0538 552 ProSitePatterns EF-hand calcium-binding domain. 492 504 IPR018247 -
Vvi17g0538 552 SUPERFAMILY Protein kinase-like (PK-like) 52 356 IPR011009 -
Vvi17g0538 552 ProSitePatterns EF-hand calcium-binding domain. 456 468 IPR018247 -
Vvi17g0538 552 ProSiteProfiles EF-hand calcium-binding domain profile. 479 514 IPR002048 GO:0005509
Vvi17g0538 552 Gene3D Phosphorylase Kinase; domain 1 71 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0538 Vvi-Chr17 6012748 6021214 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0538 1 552 EF-hand Containing Proteins AT1G74740 79.928 0.0 922
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vvi17g0538 Pkinase 1.8e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0538 K13412 - vvi:100246691 1105.51