Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0536 ATGGTAACGGGGGTCGAATCGGAGGGTTCGGCTTACTCTGCGATCAAACTGGAATGCGAGCGGTCGCTGACCGCCCTCCGCCGGGGGAACCACAACAAAGCCCTAAGAATCATGAAGGAGTTGAGTGTTCGCCACGACAACTCTGTGCACTCGGCGTTGATTCACCGAGTTCAGGGGACTGTGTGTGTGAAGGTAGCGTCGATTATTGATGATCCCAATGCGAAGCAGCGGCATTTGAAGAATGCCATTGAGACTGCTAAGAAAGCGGTGGAGCTGTCACCGAATTCCATTGAGTTTGCTCATTTTTATGCCAATTTGCTCTATGAGGCAGCGAGTGAGGGGAAGGAGTATGAAGAGGTGGTGCATGAGTGTGAACGGGCATTGTCTATTGACAGTCCGGTTGATCCTGCAAAGGAAAGCTTGCAGGATGAGAGCCAGCAGAAGATATCAACAGTGGAAGCACGGATTGGGCATGTGCAGAATGAGTTGCGGTCTCTTATTCAGAAATCGAACATTGCATCAATTTCGACTTGGATGAAGAATCTTGGAAATGGGGAGGAGAAGTTTAGGTTGATTCCAATAAGGAGGGTTTCGGAAGACCCCATGGAGGTGAGGTTGGTGCAAAGTAAGCGGCCTAATGAGATCAAGAAGGCAACTAAGACACAGGAAGAACGGAGGAAGGAGATTGAAGTCCGGGTGGCTGCAGCTAGGTTATTGCAGCAGAAGTCAGATGCGCCTCAATCACAAAGTGAGGGAGATAGGACTGATAAGGCATCAGAAACATCTTCAGGACCTGGTCAGAGAGTGGGAGAGCGACGGAAGAATGCCCGGAAATTTGGGTCTACAGTGGAAAGAAAGGTTAGGGTTAGGTCATATTGGAATTCAATGAGTTTCAATATGAGGAAAGATTTGCTTAAAATCAGGATTAGCGATCTTAAGGCCCATTTTAGTTCAGTGAAGGATGGCTTGGCAAGTGGAGTGTTATCGGAAGCTTTGTCTTTTGTAGAAGTGAATAAAGTGTGGAAGTTTTGGGTTTGCTGCCGTTGTGGTGAGAAATTTAAAGATTCAGAATTGCACATGCAGCATGTTGTGCAGGAGCACATGGGGAACCTCTTACCCAAAATGCAGTCTGTTTTGCCCCAAAACATTGACAATGAGTGGATTGAGATGATTGTTAATTGTTCTTGGAAACCACTGGATATCTCTGCTGCAGTTAAAATGCTGAAAAATGAATCAAAATGTCAACAAAATGAACTTATTGATGAATTTTACACAGGGAACAATACAGAGGAGTGCATTGATTGCTTCAAAGATGCATGGGAATCTTCCCCTGAAAAGGGGATGTTAGGCGATGGTTGCAGTTGTGGAAACTTGGTGAAGAGTGACTCTGATAAGATTCCAAACCAGGGTAGCAGAGAATGTGATGGGAATGAGGGGTCCAAGGCATACTTGCTTGCCAATAGCTGGCCACTAGCTGATGATTCTGAGCGTGCTAAACTACTTGAAAAGATTCATGTGTTGTTTGAGATGCTTATTAAACATAAGTGTCTAGCTGGGAGCCATCTTAGCAAGGTGATGCAATTTACAACGGATGAGCTGCAGGGTATTGCTTCTGGTTCTCAGCTTCTAAACTATGGTGTGGACCAAACACCTACGTGCATATGCTTTTTGGGAGCTTCCCAACTCAGGAAACTGCTTAAATTCTTGCAGGAGCTTTCTCATGCTTGTGGTTTAGCTAGATCTTCGGATAAAACAAGCAGTGCCATGGATGATGCAAATAGTCTCAATCGGGATTTTGATATCAAAGAGAATGTTCTCCTAAATGGAGATGCTTCATGCCTTCTTTTGGATGAGCATTTACTGCCAACCGAAAATACCTCCACTGCAAGTCATGTTGCTGTCACAGATGATGCTGCTACAGAAACTTCTCCAATCATTTGCAATGAAAATGGGGTTCAACCTGATGGAGGTTCTTTGTTGTCCTGGATATTTACAGGTCCCTCAAGTGTGGAACAGTTGGCATCATGGATGCGTATAAGAGAGGAGAAATCCAATCAAGGAATGGAGATTTTACAGATGCTGGAGAAGGAATTTTACCACCTGCAGAGCTTGTGCGAGAGAAAATGTGAGCATTTAAGCTACGAGGAAGCATTGCAAGCTGTGGAAGATCTGTGTCTTGAAGAAGGTAAAAAGAGGGAGAATGTCACTGACTTTGGTAGTCGAAGCCTTGAGTCTGTCTTAAGGAAGCGACGTGAAGAACTTAGGGAGAGTGAGAATGAAGTCATGCTCATCAGCAATAGATTTGAGTTAGATGCCGTAATAAATGTTTTAAAAGAAGCAGAATCTTTGAATATGAATCAGTTTGGATATGAGGAACATTACAATGGTGTTACCTCTCATCTTTGTGACTTGGAATCTGGTGAGGATGATGATTGGAGATCAAAGGACTTTCTGCATCAAATGGATGCTTGCATAGAAGTTGCTATTCAGAGACAGAAAGAACAGTTATCTGTTGAGCTGAGCAAAATTGATGCAAGAATCATGCGAAATGTTACTGGGATGCAGCAGTTAGAGCTTACTCTTGAGCCTGTGTCTGCCTTTGATTATCGGTCCATAATATTGCCTCTATTGAAATCATTCATGCGGGCACACTTGGAGGATCTGGCTGAGAAAGATGCCACACAGAAATCTGATGCTGCAAGGGAAGCATTTTTAGCAGAACTTGCACTTGATTCCAAAAAGAGTGCCATTGGGGGAAGTGATAATTCAAGACATAACCATGACAAGACAAAAGAAAAGAAAAAAGGCAAAGAGTATAGGAAAATGAAGGATTCAAAGGGTACTGGTGGTAGCGAGCAGCACGTTCTTCATCATGTGACAACTGAACAGGATTCTAGTCCAGTTGCATCTGATGGTGAACATCCAGACTCTGAGCCTGTTGTTTCCGTGAATGATGACAATTCAAAACATCAAGAAGAGGAACTTAGACGAAAGATTGAGCTTGAAGCAGAGGAAAGGAAACTTGAAGAAACTTTGGAGTATCAAAGACGAATTGAGAATGAGGCTAAACAGAAGCACCTGGCTGAGCAACGTAAGAAAACAACTGGAATAATTCCAGAGAAGGTGGTGACAGGATTTTCTGGTGGTTACTTAAATCCTAGTGCTGATGAGCATGATGCACATGAACAATTGGAACATTTTAAGCAGAAGAGCCAGTTCCCAAACAGTTTTGATGGCATGCCTAGGGATGTTATGGATGGTACTACAGTGCTGATTGACTCAATTACTAGTTCTGCTAATCAGAGGCTTAGAAGCACTCCCAGTCAGTATCATGCAAAAGTTGAACAAGGCTTACCTAATGGTGGAAGTCCAGTGGATGGTGTTTTGCTTTCTGAGCGGCGGATAGGAAGAAAAACTAAACGGCAAAAGAATTCCACCAAATTGATCGATGGGAAGTATCAGGCTGTATCATCTGGAAAGGAAAACGTTGAAGTGGGGATTTCACATATTGAAGATCGCGTCAAAGAGCAAATTAAAATTCATGGCAGTGGAGTTAATCTTCATTTGGGAGACAATGGAACAAAGACATTAAGACAGTTACAAGCAGAGGAGGATGATGAGGAAAGATTCCAAGCAGACCTTAAACAAGCCGTACGTCAAAGCCTTGATGCATATCAAGCACATCAGAAACTACCCCTGGTTTCAAGTTTAAGAATGCCACAAAGGATGTCTCATGAAGTGGATGATGTTGGTCTTTCACCAGATGACGTGGTAATTAAAAATATGTCTGGAGCAGATATGTTGGGTACTGGGCTGAAGAATGAAGTGGGTGAATACAATTGTTTTCTGAATGTAATCATACAGTCTTTGTGGCATTTAAGACGATTTCGAAATGAGTTCTTGGGGAGATCAACATCAGAGCATGTTCACGTCGGAGATCCTTGCGTTGTGTGTGCATTATATGAAATTTTCACTGCCCTGAGCGTAGCATCTACAGATACACGACGAGAAGCAGTTGCCCCTTCTGCTCTGAGGATTGCTCTAAGCAATCTATATCCAGATAGTAATTTTTTCCAGGAGGCACAGATGAATGATGCTTCTGAAGTGCTGGGAGTAATATTTGACTGCCTTCATCGGTCATTCACTTCTTCTTCCAGTATTTCTGATACTGAATCAGTGGAAAGCAATTGCATGGGGTCTTGGGATTGTGCAAACAGCATTTGTCTTGCACATTCTCTTTTTGGAATGGACATTTTTGAGCGAATGAATTGCTACAATTGTAGTTTAGAGTCTAGGCATCTAAAGTACACTTCCTTCTTTCATAATATCAATGCCAGTGCACTGCGAACAATGAAGGTTATGTGTGCAGAAAGCTCCTTTGATGAGCTATTGAATCTCGTAGAAATGAATCACCAGTTAGCTTGTGATCCTGAGGCTGGTGGCTGTGGGAAGTTCAACTATATCCATCATATTCTCTCAACTCCACCACATGTTTTTACAATAGTTTTGGGTTGGCAGAATACATGTGAGAGTGCTGATGACATAACAGCAACATTAGCAGCACTGAATACTGAGATAGATGTCAGTGTCCTTTATCGTGGTCTAGATCCAAAGAACCGATATTGCTTGGTTTCAGTGGTATGCTATTATGGGCAACATTATCATTGCTTTGCCTATAGTCATGAGCATGAACGGTGGGTTATGTATGATGATAAAACAGTCAAGGTAATTGGTAGCTGGGACAATGTTCTTACCATGTGTGAAAGAGGACATTTGCAACCTCAGGTTCTTTTCTTTGAAGCTGTAAATTAG 4812 0.4279 MVTGVESEGSAYSAIKLECERSLTALRRGNHNKALRIMKELSVRHDNSVHSALIHRVQGTVCVKVASIIDDPNAKQRHLKNAIETAKKAVELSPNSIEFAHFYANLLYEAASEGKEYEEVVHECERALSIDSPVDPAKESLQDESQQKISTVEARIGHVQNELRSLIQKSNIASISTWMKNLGNGEEKFRLIPIRRVSEDPMEVRLVQSKRPNEIKKATKTQEERRKEIEVRVAAARLLQQKSDAPQSQSEGDRTDKASETSSGPGQRVGERRKNARKFGSTVERKVRVRSYWNSMSFNMRKDLLKIRISDLKAHFSSVKDGLASGVLSEALSFVEVNKVWKFWVCCRCGEKFKDSELHMQHVVQEHMGNLLPKMQSVLPQNIDNEWIEMIVNCSWKPLDISAAVKMLKNESKCQQNELIDEFYTGNNTEECIDCFKDAWESSPEKGMLGDGCSCGNLVKSDSDKIPNQGSRECDGNEGSKAYLLANSWPLADDSERAKLLEKIHVLFEMLIKHKCLAGSHLSKVMQFTTDELQGIASGSQLLNYGVDQTPTCICFLGASQLRKLLKFLQELSHACGLARSSDKTSSAMDDANSLNRDFDIKENVLLNGDASCLLLDEHLLPTENTSTASHVAVTDDAATETSPIICNENGVQPDGGSLLSWIFTGPSSVEQLASWMRIREEKSNQGMEILQMLEKEFYHLQSLCERKCEHLSYEEALQAVEDLCLEEGKKRENVTDFGSRSLESVLRKRREELRESENEVMLISNRFELDAVINVLKEAESLNMNQFGYEEHYNGVTSHLCDLESGEDDDWRSKDFLHQMDACIEVAIQRQKEQLSVELSKIDARIMRNVTGMQQLELTLEPVSAFDYRSIILPLLKSFMRAHLEDLAEKDATQKSDAAREAFLAELALDSKKSAIGGSDNSRHNHDKTKEKKKGKEYRKMKDSKGTGGSEQHVLHHVTTEQDSSPVASDGEHPDSEPVVSVNDDNSKHQEEELRRKIELEAEERKLEETLEYQRRIENEAKQKHLAEQRKKTTGIIPEKVVTGFSGGYLNPSADEHDAHEQLEHFKQKSQFPNSFDGMPRDVMDGTTVLIDSITSSANQRLRSTPSQYHAKVEQGLPNGGSPVDGVLLSERRIGRKTKRQKNSTKLIDGKYQAVSSGKENVEVGISHIEDRVKEQIKIHGSGVNLHLGDNGTKTLRQLQAEEDDEERFQADLKQAVRQSLDAYQAHQKLPLVSSLRMPQRMSHEVDDVGLSPDDVVIKNMSGADMLGTGLKNEVGEYNCFLNVIIQSLWHLRRFRNEFLGRSTSEHVHVGDPCVVCALYEIFTALSVASTDTRREAVAPSALRIALSNLYPDSNFFQEAQMNDASEVLGVIFDCLHRSFTSSSSISDTESVESNCMGSWDCANSICLAHSLFGMDIFERMNCYNCSLESRHLKYTSFFHNINASALRTMKVMCAESSFDELLNLVEMNHQLACDPEAGGCGKFNYIHHILSTPPHVFTIVLGWQNTCESADDITATLAALNTEIDVSVLYRGLDPKNRYCLVSVVCYYGQHYHCFAYSHEHERWVMYDDKTVKVIGSWDNVLTMCERGHLQPQVLFFEAVN* 1604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0536 1603 Coils Coil 740 767 - -
Vvi17g0536 1603 Pfam Protein of unknown function (DUF627) 23 131 IPR006866 -
Vvi17g0536 1603 MobiDBLite consensus disorder prediction 978 994 - -
Vvi17g0536 1603 MobiDBLite consensus disorder prediction 954 970 - -
Vvi17g0536 1603 MobiDBLite consensus disorder prediction 240 277 - -
Vvi17g0536 1603 Pfam Ubiquitin carboxyl-terminal hydrolase 1271 1598 IPR001394 GO:0004843|GO:0016579
Vvi17g0536 1603 Gene3D Tetratricopeptide repeat domain 14 164 IPR011990 GO:0005515
Vvi17g0536 1603 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1270 1602 IPR028889 -
Vvi17g0536 1603 CDD Peptidase_C19 1361 1600 - -
Vvi17g0536 1603 Coils Coil 991 1021 - -
Vvi17g0536 1603 MobiDBLite consensus disorder prediction 915 994 - -
Vvi17g0536 1603 SUPERFAMILY Cysteine proteinases 1270 1600 IPR038765 -
Vvi17g0536 1603 ProSitePatterns Zinc finger C2H2 type domain signature. 346 367 IPR013087 -
Vvi17g0536 1603 Pfam Protein of unknown function (DUF629) 288 827 IPR006865 -
Vvi17g0536 1603 MobiDBLite consensus disorder prediction 208 227 - -
Vvi17g0536 1603 Gene3D Cysteine proteinases 1260 1603 - -
Vvi17g0536 1603 Coils Coil 1200 1220 - -
Vvi17g0536 1603 MobiDBLite consensus disorder prediction 918 951 - -
Vvi17g0536 1603 PANTHER UBIQUITIN SPECIFIC PROTEINASE 22 1602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0536 Vvi-Chr17 5989375 5999449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0536 15 1600 C2H2 Transcription Factor Family AT3G47890 60.526 0.0 1830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0536 - - vvi:100256959 3129.73