Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0535 ATGACCCTTAAAGGTGGGACTAGCCAAGCATGCGCTGCCTGCAAGTACCAGAGGAGGAAGTGCTCCTCTGAGTGTCCTCTTGCCCCTTACTTCCCTCCTGATCAGCCCAAAATGTTTGCCGACGCTCACAGGCTCTTTGGTGTCAGCAACATCCTTAAAATTCTCAAGCAATTGGACCCCACCCAGAAACTCACCGCCATGCAGTCCATCATCTACCAGGCCACCATCCGTGAGCGCTATCCGGTTAGCGGCTGCTTGGGTTTGATTTGCCAACTCCATTACCAAATCCGCCAGACCGAGGACGAGCTTCATGTTGTCCTTTCACAGCTTGAAATCTGCCGCCAGCACCACCACCAACAGATACAGATGGCCTCTGCACCCAGTGATTCCTCCTCTTCCCCCTTGGAGCTAGGCTGCAGTGCCCTCTCTCTCCATCATAACCCTCCTCCTCCTCCTCCGGAATACAACGCTGTTTCTGTTGCTGGCGGTGGTGATGGTGGTCTGCCTGTTGGAGTTGGAACCCATCACCCATATTCTCCTACGACCAATGCGCCTTTCAATTTTGATTTCCTTGATCCCAAAGACAATTCTCTGAATCCTGTGTGGCCTCAGAATTCATTCAGTATCACCAACAACAATGATGTTCACAATTCCTTGACAATCCAGCCTCAACCCGTTGCCACACAGCCCTTACCCCTCCAACCCCAGGCTGCCCAGGATTATGATGAGATACATCCATTCTTCGATACTTTTGACGACAGACAGTCATACGTAGATTCCAAAGAGGCTTATGAATCAAGCTCGGAATCATCCTTCAAAGATGCCACCCAGTCCACTGACAATGTTGCTGAGAATGAATTGAAAAGCGCTGCGGCATGCTTCAGTCTCATCAGTCTCGGCCAATGA 906 0.5088 MTLKGGTSQACAACKYQRRKCSSECPLAPYFPPDQPKMFADAHRLFGVSNILKILKQLDPTQKLTAMQSIIYQATIRERYPVSGCLGLICQLHYQIRQTEDELHVVLSQLEICRQHHHQQIQMASAPSDSSSSPLELGCSALSLHHNPPPPPPEYNAVSVAGGGDGGLPVGVGTHHPYSPTTNAPFNFDFLDPKDNSLNPVWPQNSFSITNNNDVHNSLTIQPQPVATQPLPLQPQAAQDYDEIHPFFDTFDDRQSYVDSKEAYESSSESSFKDATQSTDNVAENELKSAAACFSLISLGQ* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0535 301 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Vvi17g0535 301 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 136 - -
Vvi17g0535 301 MobiDBLite consensus disorder prediction 121 138 - -
Vvi17g0535 301 MobiDBLite consensus disorder prediction 121 152 - -
Vvi17g0535 301 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0535 Vvi-Chr17 5986213 5987215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0535 1 263 AS2 family AT3G47870 36.991 1.60e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi17g0535 LOB 6.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0535 - - vvi:100262064 548.51