Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0534 ATGGGCGGAGACGACGGCGGTGGCGGCGGCTGTGGGGTTTCTCCGGAACTTGCCTCGCAGACGGAGGCGGAAGCGGCAGCGCAACCGCTAGAGCCGTTGTGCCGGTCGGTCTCCGGGGCCCAACTTCGGGACGCTCCGATTCTTCTCTTTGTGTTCTTCCACAAGGCTCTGCGTGCAGAGCTCGCAGAGCTACGGCGGTTGGCGGCGGCGGAGAGTGGGTGCCGCGGAGGCAGCAGTAACGGCAATCTGGTCGTCGAAATCCGCCGGCGGTTCGAGTTTTTGAAGCTTTTTTATAAGTATCATAGTGCTGCGGAGGATGAGGTGATCTTTCTAGCACTAGATGTGCACATAAAAAATGTGGCACATACATATTCACTTGAACATAAAAGCATAGATGATCTCTTCAGCTCTATTTTTCATTGCTTGGATGTTTTAATGGAAGGTGATGCAAATACTGCCAAGCCATTTCAAGAACTCGTACTTTTAATCAGCACAATTCAAACCACCATTTGCCATCATATGCTGAAAGAAGAAGAGCAGGTTTTTCCTTTGCTTATGAAGCAATTCTCTCCCCAAGAACAGGCTTCTCTTGTTTGGCAGTTTATGTGTAGTGTTCCTGTACTCCTGCTGGAGGATTTCTTACCATGGATGACTTCTTTTCTTTCTCCAGAGGAACAAGTGAATGTAGTGAATTGTATAAAAGAAGTTGTACCTGAGGAAAAACTGCTGGAAGAGGTGGTAATCTCCTGGCTTGGTAACAATAACCAACCTTTTGGATCCCCCACTAGAATTGGAGAAGAAGCTCAAAGTGTTGGACCTGCAAATTTGAAGGATGCACTGAAAGTGTATTCATCTAAGAGTTTTTCTACAGAAATTCGGCAATGGAAGGAAGTGTTTGGTCTCAAGACCAATGTTGGACAAAATCCAGTTGATGGCCTTCATCTTTGGCATGGTGCCATTAGGAAAGATTTGAAAGGAATTTTGGAGGAGCTATATCAAATAAGAAGCTCAGACAGTTTCTCAACATTAGCTTCAGTTATTGTCCAGCTAAAATTTCTTGCAGATGTTCTTATCTTCTATAGCAATGCATTGGATAAAATATTTTATCCTCTGTTAGATCTGCTTTCCGATGGCTGCCTCTCTCCCTCCTACAAACGATTTCCAGATGAAAGTCAAATTGAAGGTCTACAGAGATTGTTACACTATAATGCTAAAAATGGGATCCCTTTGTCCAAGTTTGTGGAGAAGCTTTGTTGGGAACTGGAGTCTTTTGTTATGGGGATTGGTGACCACTTGGTTTTTCAAGAAATGGAGGTATTTCCCCTTATTAGCGCAAAGTGCAGCCATGAACTGCAGAAGTGGCTACTGTACATGAGCCTTCTTATGATGCCACTTGGATTGCTGAAATGTGTAATTACCTGGTTCTTGGCTCATTTATCTGAGGAAGAATCCAAGTCTATTCTGAAAAGCATAAAGCAGGAAGATTCTTTAGTCAATATGTCCTTTGCATCCCTCTTGCATGAGTGGGTTCGCATTGGTTATTCAGGTAAAACCTCAGTGGAAAAATTCAGAAAGGACTTGCAGGAAATGTTCAAGAGCAGAAGCTCTTTTCACTCTGATCAAATTGAGGAAGATGGTCGATCTTTTTTCTCACCTTCAGATGCAAAACCTTGTGAAAGATCTAACCCTGGGCTGATGAAACCAATCCCTGGCAACAAGGCCACTCATTCTGTGAATGATTCTTCATCCTCTGGTTCCCACACCTCTGAGAAGTATGGTACATCCTACTCAAGTGGGATCAATTTGCATATATTTTTCCCTGGGACATTGAAGATATTCCATCCTGTCCCTAACTTTCCTGATGGGATGGGTGATGCCAGTTCCATTCTTAATCTTGAACCAAGACCAGTGGACCTTATCTTTTTTTTCCACAAGGCCCTCAAAAAAGACCTGGAATTCCTTGTCTTTGGTTCAGCTAAGTTGGCTGAAAACACTGGATACCTTGCTGACTTCCATCGGCGCTTTCGTCTCATACGTTTTCTCTATCAAATTCATAGTGATGCAGAGGATGAGATTGCCTTTCCAGCTTTGGAGGCAAAGGGAAAAGGCCAGAACATTAGCCACTCGTACACAATTGACCACAAATTGGAAGTTGAACACTTCAATAAATTATCCTTTATTCTAGATGAGATGTCCAAATTGCATATTTCAGTTTCTGGTGTTCATTTCGATAAGATGGATCAGAGAATGCTGAAGTACCATCAGCTGTGTATGAAGCTCCATGATATGTGCCAATCACTGCAGAAGATACTATGTGATCATGTTAATCATGAAGAGATTGAACTTTGGCCCCTATTCAGAGAATGCTTCTCCAACAAGGAGCAAGAAAAGATAATAGGAAGCATTCTTGGAAGAATGAGAGCAGAAATCCTACAGGAAATAATACCCTGGCTTATGGCATCTTTAACACCAAAAGAACAGCATGCCATGATGTCCTTATGGCGTAAGGCTACCAAAAATACAATGTTTGAAGAATGGTTAGGAGAATGGTGGGATGGTGTGAATCAGTATGACATAGCTAAGGTGGTGGAGGAGTCAAAAATGCCTCAGCCATGGTTGGCTGATCCATTAGAAGTTGTCTCGAGGTATCTTTATAAAGAAGATACTGGTGAGGAGGTTTCTGAAAAAAGTGATGAGTTTCTGCTAAACGATTCTGTCAGCGCTAATATTATGCTGCCTGGAAATCATGCTGTGGACAATAAAGAAAAACTTCTTAATGAAGACCACGACAATCACCAATGCTCAGAATGTAAGAAGCCTTACAGTGAAAATGAGAAGAAGAGATCCAATGAAGTAGCTGATGTAACAAATCAGGTCAATAGACCAGGTCAGCTTTTGCAAGATAATCAGCAGTTCAGCCATCAGGAGCACCTTCTGTCAATGAGTCAGGACGATTTGGAAGCTGCAATAAGAAGAGTATCCCGTGATTCTTCTTTAGATCCTCAAAAGAAATCACATATAATCCAGAACCTGCTAATGAGTCGCTGGATTGTCAGACAACAAAAATCTCATTCAGAAGTTGCTGTCTTGGGTAGTGGGAAAGAAATTCCAGGTCAATGTCCATCTTATCGGGACCCTCTCAAACTAACTTTTGGTTGCAAACATTACAAGAGGAACTGTAAGCTTGTTGCAGCCTGCTGCAACCAGCTTTATGCATGCAGACTTTGCCATGATGATGTGACTGATCATTCAATGGATAGGAAAAAAACTACAAAGATGATGTGCATGAGATGCTTGGTAATTCAACCAGTTGGTCCAACATGCTCTACTGCTTCTTGTGATAATTTATCTATGGCAAAATACTATTGCAGGATCTGCAAATTTTTTGATGATGAAAGGGAAATCTACCACTGCCCTTACTGTAACCTATGCCGAGTTGGGAAGGGATTGGGAATTGACTATTTTCATTGTATGAATTGCAATGCTTGTATGTCGCGATCTCTTTCTGTGCATATATGTAGAGAGAAGTGGATGGAGGATAATTGCCCTATTTGCCATGAATTCATCTTCACCTCAAGCTCTCCAGTTAAGGCTCTACCATGTGGTCATTTGATGCACTCAGCATGTTTTCAGGACTACACTTGTACTCATTATACCTGCCCAATCTGTAGCAAGTCACTTGGGGATATGCAGGTTTATTTTGGGATGTTAGATGCATTGTTGGCTGAAGAGAAAATTCCAGATGAGTATTCTACGCAGACTCAGATGATCCTGTGCAATGATTGTGAGAAGAGAGGAACTGCTGCTTTCCATTGGCTTTATCACAAGTGCCCTTATTGTGGTTCATACAACACAAGGGTTATATGA 3867 0.4231 MGGDDGGGGGCGVSPELASQTEAEAAAQPLEPLCRSVSGAQLRDAPILLFVFFHKALRAELAELRRLAAAESGCRGGSSNGNLVVEIRRRFEFLKLFYKYHSAAEDEVIFLALDVHIKNVAHTYSLEHKSIDDLFSSIFHCLDVLMEGDANTAKPFQELVLLISTIQTTICHHMLKEEEQVFPLLMKQFSPQEQASLVWQFMCSVPVLLLEDFLPWMTSFLSPEEQVNVVNCIKEVVPEEKLLEEVVISWLGNNNQPFGSPTRIGEEAQSVGPANLKDALKVYSSKSFSTEIRQWKEVFGLKTNVGQNPVDGLHLWHGAIRKDLKGILEELYQIRSSDSFSTLASVIVQLKFLADVLIFYSNALDKIFYPLLDLLSDGCLSPSYKRFPDESQIEGLQRLLHYNAKNGIPLSKFVEKLCWELESFVMGIGDHLVFQEMEVFPLISAKCSHELQKWLLYMSLLMMPLGLLKCVITWFLAHLSEEESKSILKSIKQEDSLVNMSFASLLHEWVRIGYSGKTSVEKFRKDLQEMFKSRSSFHSDQIEEDGRSFFSPSDAKPCERSNPGLMKPIPGNKATHSVNDSSSSGSHTSEKYGTSYSSGINLHIFFPGTLKIFHPVPNFPDGMGDASSILNLEPRPVDLIFFFHKALKKDLEFLVFGSAKLAENTGYLADFHRRFRLIRFLYQIHSDAEDEIAFPALEAKGKGQNISHSYTIDHKLEVEHFNKLSFILDEMSKLHISVSGVHFDKMDQRMLKYHQLCMKLHDMCQSLQKILCDHVNHEEIELWPLFRECFSNKEQEKIIGSILGRMRAEILQEIIPWLMASLTPKEQHAMMSLWRKATKNTMFEEWLGEWWDGVNQYDIAKVVEESKMPQPWLADPLEVVSRYLYKEDTGEEVSEKSDEFLLNDSVSANIMLPGNHAVDNKEKLLNEDHDNHQCSECKKPYSENEKKRSNEVADVTNQVNRPGQLLQDNQQFSHQEHLLSMSQDDLEAAIRRVSRDSSLDPQKKSHIIQNLLMSRWIVRQQKSHSEVAVLGSGKEIPGQCPSYRDPLKLTFGCKHYKRNCKLVAACCNQLYACRLCHDDVTDHSMDRKKTTKMMCMRCLVIQPVGPTCSTASCDNLSMAKYYCRICKFFDDEREIYHCPYCNLCRVGKGLGIDYFHCMNCNACMSRSLSVHICREKWMEDNCPICHEFIFTSSSPVKALPCGHLMHSACFQDYTCTHYTCPICSKSLGDMQVYFGMLDALLAEEKIPDEYSTQTQMILCNDCEKRGTAAFHWLYHKCPYCGSYNTRVI* 1289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0534 1288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1175 1226 IPR013083 -
Vvi17g0534 1288 SUPERFAMILY Zinc hairpin stack 1119 1173 IPR037275 -
Vvi17g0534 1288 CDD RING-H2_Pirh2-like 1181 1224 - -
Vvi17g0534 1288 ProSiteProfiles Zinc finger CTCHY-type profile. 1118 1181 IPR017921 -
Vvi17g0534 1288 MobiDBLite consensus disorder prediction 538 590 - -
Vvi17g0534 1288 ProSiteProfiles Zinc finger CHY-type profile. 1046 1115 IPR008913 GO:0008270
Vvi17g0534 1288 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 679 1288 - -
Vvi17g0534 1288 FunFam Zinc finger protein-related isoform 1 1177 1226 - -
Vvi17g0534 1288 ProSiteProfiles Zinc finger RING-type profile. 1182 1224 IPR001841 -
Vvi17g0534 1288 Pfam Hemerythrin HHE cation binding domain 52 185 IPR012312 -
Vvi17g0534 1288 Pfam CHY zinc finger 1053 1128 IPR008913 GO:0008270
Vvi17g0534 1288 Pfam Zinc-ribbon 1229 1286 IPR039512 -
Vvi17g0534 1288 FunFam Zinc finger protein BRUTUS 631 849 - -
Vvi17g0534 1288 Pfam Ring finger domain 1180 1223 IPR001841 -
Vvi17g0534 1288 MobiDBLite consensus disorder prediction 574 590 - -
Vvi17g0534 1288 Gene3D - 1252 1288 - -
Vvi17g0534 1288 Gene3D nmb1532 protein domain like 45 203 - -
Vvi17g0534 1288 Gene3D nmb1532 protein domain like 632 805 - -
Vvi17g0534 1288 CDD Hr-like 49 183 - -
Vvi17g0534 1288 SUPERFAMILY CHY zinc finger-like 1045 1109 IPR037274 GO:0008270
Vvi17g0534 1288 CDD Hr-like 638 784 - -
Vvi17g0534 1288 SMART ring_2 1182 1223 IPR001841 -
Vvi17g0534 1288 SUPERFAMILY RING/U-box 1170 1228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0534 Vvi-Chr17 5969173 5981008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0534 615 870 C2H2 Transcription Factor Family AT3G18290 26.255 5.03e-16 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0534 K16276 - vvi:100267228 2595.46