Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0533 ATGTTGAGCAGCAAATGGATTACTACAGTGGCAAGCATATGGATCCAGTGCACCTGCGGCGGATCCTACGCCTTCGGCGTCTACTCATCGGTTCTCAAATCTAGCCAAAGTTACGACCAAGCAACGCTCGATACCGTCTCCGTGTTCAAAGACATCGGAGCCAACGCCGGTGTCCTCTCCGGCCTCCTCTACTCCGCCGCCTCTTCCGTTTCTTATCTCCTCAGTTTTGGTGGACCGTGGGTGGTCCACGTGGCAGGGGCGATTCAGTGCTTTGCTGGCTATTTTCTTATATGGCTGTCCGTCACTGGAGTCATTCATCGGCCTGCAGTGCCGCTGATGTGCTTGTTCATGTTCATCGCCGCTCACGCTCAGACCTTCTTCAACACTGCTAATGTCGTCACCGCCGTTCAGAACTTCCCGGATTATGGCGGCACCATCGTCGGTATCATGAAGGGCTTTCTTGGTCTGAGTGGGGCAGTGTTAATCCAAGTGTACGATGCATTATTCGAAGGCAATCCGAGCATTTTCATTCTGATGCTTGCGTTGCTGCCGACTTTCATCTCCCTCTTGCTGATGTGTTTGGTTAGAATCGATGAAAGAGACACACAAGGCAACAAGAAGCAGTTGAATCGTTTCTCCACTGTCGCTCTCCTTGTTGCTGCTTATCTTATGATCGTGATAATCTTGGAGAACATCTTTACTTTTCCGTTATGGGCACGCATCGCTACTCTCATACTTCTTTTGCTTCTGCTGGCTTCCCCTCTTGGAATCGCAGCCAATGCCCTTAAGGATGAATCAGAGATATCATCACAAGGGTTGGTGTCCTCCGAGAGGAGCCCATTGCTGAGTGACAATGGGTCCCTACAGTCTGAGAGGTGGTCTTCAGCTGCAGGGGATCCTAAAGAACATCATGCAGCAGACGAAGACACCCCAATGCTGCAGGATGAGGAAGACCTGAATGTTGTGCAAGCCATGCGGACTGGAAACTTCTGGTTGTTGTTCATAGCCATGGCATGTGGAATGGGGTCCGGGCTGGCTACAATAAATAACATCAGCCAAATAGGAGAATCTCTTGGTTACACTACAGTTGAGATAAACACTCTGGTTTCTTTGTGGAGTATATGGAATTTTCTTGGCCGTTTTGGAGCTGGATATGTATCGGATATTCTGCTGCATAGAAGAGGCTGGGCAAGGCCATTGTTGATGGTCATCACCCTGGCTACCATGACTATTGGCCATGTGATCATTGCCTCTGGTTTTGCGGGGAATTTGTATGTGGGTTCAGTAATAGTAGGGGTTTGTTATGGTTCACAGTGGTCATTGATGCCCACCATCACTTCCGAGCTATTTGGTGTTGGGCACATGGGTACCATCTTCAACACCATTGCCATAGCCAGTCCTGTTGGCTCTTACCTTCTCTCTGTTAGAGTAATCGGGTACATCTATGACAAGGAAGCATCAGGCAAGCAGAACTCATGCTCCGGCACTCATTGTTTCATGTTATCATTTCTGATCATCGGATGTGTTACTCTTTTTGGGTCACTCGTTGCTTCTGCATTGTTCTTCCGAACAAAGAGGTTCTATAAGTTGGTTGTACTTAGAAGGCTAAACCTTTCTCTGCAAGACGATGACAGGTAG 1638 0.4853 MLSSKWITTVASIWIQCTCGGSYAFGVYSSVLKSSQSYDQATLDTVSVFKDIGANAGVLSGLLYSAASSVSYLLSFGGPWVVHVAGAIQCFAGYFLIWLSVTGVIHRPAVPLMCLFMFIAAHAQTFFNTANVVTAVQNFPDYGGTIVGIMKGFLGLSGAVLIQVYDALFEGNPSIFILMLALLPTFISLLLMCLVRIDERDTQGNKKQLNRFSTVALLVAAYLMIVIILENIFTFPLWARIATLILLLLLLASPLGIAANALKDESEISSQGLVSSERSPLLSDNGSLQSERWSSAAGDPKEHHAADEDTPMLQDEEDLNVVQAMRTGNFWLLFIAMACGMGSGLATINNISQIGESLGYTTVEINTLVSLWSIWNFLGRFGAGYVSDILLHRRGWARPLLMVITLATMTIGHVIIASGFAGNLYVGSVIVGVCYGSQWSLMPTITSELFGVGHMGTIFNTIAIASPVGSYLLSVRVIGYIYDKEASGKQNSCSGTHCFMLSFLIIGCVTLFGSLVASALFFRTKRFYKLVVLRRLNLSLQDDDR* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0533 545 Pfam Nodulin-like 5 257 IPR010658 -
Vvi17g0533 545 CDD MFS_Mch1p_like 4 513 - -
Vvi17g0533 545 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 6 529 - -
Vvi17g0533 545 SUPERFAMILY MFS general substrate transporter 6 200 IPR036259 -
Vvi17g0533 545 SUPERFAMILY MFS general substrate transporter 218 526 IPR036259 -
Vvi17g0533 545 MobiDBLite consensus disorder prediction 277 294 - -
Vvi17g0533 545 MobiDBLite consensus disorder prediction 277 310 - -
Vvi17g0533 545 MobiDBLite consensus disorder prediction 296 310 - -
Vvi17g0533 545 Pfam Major Facilitator Superfamily 332 525 IPR011701 GO:0022857|GO:0055085
Vvi17g0533 545 Gene3D MFS general substrate transporter like domains 320 529 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0533 Vvi-Chr17 5959328 5961548 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0533 1 537 Nodulin-like Gene Family AT1G74780 64.088 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0533 - - vvi:100244916 1020.38