LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi17g0529	ATGTCCCAATCCTCTTCCCCTCCGATCCACAACCACCGATCTTCCCCTCAACCCCACTCCCAAAACGACACTCCCACCCCTCAAAACGACACCCAAACCACCACAACAACCGCCGCCGCAATCCCCGCCCCCGCCGTCACAAGGAAGGAGCGTCCGCCTCGCGCGTGCACGACCAGGGCTGCGGCGCGGCTCTACGCGGACCCGCCGGTGATCGAGCGCCGGTCGAAGCCGGCCAAGAAGGAGCGGAACGAAGAGTCGCCGCAGCAGCAGCAGCAATGCGCCAGCAAGATCGTGACGCCGCTCGTGAACTCGCCTCCGCCCTCGCAGTTGCCGCGCTGGACCCTCCGTTCCATGTGGGAGTTGGCTTCCATACTCAATTTCTTGCATGTTTTTAGGCCCCTTTTGAATATTGCAGTGGAATTCTCCGCTGAAGAGTTCGAGACAGCTTTGATTACGCCCAACAACACTTTGTCTGATATACATATTCCCTTATTGAAGGCAATCCCTCCTGTTACACGAATGGCACTTACACGTGGTACTTGGGTTACCGTTTTATGCAGAAAATTGAGAGACTGGTGGCATTGGGTTGCAGAAGGGGAGATACCCATTGTTGCTTCGCAAGGGGCTGAGGTTGGAATGTATAATGCTCTTGATCCTGGGGTTCGTGTGGTGATCCTGAAAGCATTATGTGACATTCGGGTTGAGCAAGAAGATATCCGGATCTTTATTGACAACTCAATTAAACATGGTGTTCAACTGTCAGCATTTCGTAAAGAACGAGTAGGGGGTGATTCACATGGAATTTCTTACTGGTATGAAGATGATCCTATTATTGGTCATCGATTATACCGGGAGATAAGGAAAGTTGAAGTGAAGAAAGCAAAGGTCAAGGGTTCCCAGTGCCTTCCCAATGCATCTTACCAGTGGGAGACGGTTGCAACTAATTTGGATGAATTTCAAGATGTGTCTGAAAAGCTTTTCTCAAGTAAAAATAGAACAGAAGCTTCACTAGGGAAGAAGTTAAAGAATGACATGCTTCCTGAGATTGAGAAGGTCCACAAGAGGAAAGAGAGGATGCTGAAAAAACAACATAGACAAGCTCTTCTTCTTGATAACTTCTTGAGTGTGGATGGGCTTGCCCCAGGACGTTCACTCCGCGACAGAAAACCTGTCACCTATACATTTGATGATTATGACCGGTCAATCAATGAGGCAATCAAAATTACCAAACGGAAACCACCATCCCCAGAACCTACTGTTAGAAGAGAGGGTGTTACAAAACCTGAGCCTTCTACAAATGGTAGATGGAGTGGTCCTTCACAAGCCCCTCAACATGTTAATTTCAATGCACTGTCTCCAAAATCACCCGATTATGATGAGATTGATGATGAACATAAATCTGAACCCTTGGACCGAAGCAATCGGCGAAGACAAAGGCCTCAACGATATTCAGAGAAGGAATTTGTTGAAGCAGTTTCAGATAATGATGCTGACTTTGACAGTGATGATGATATAGTCGGAGAAGCTGTATATGATGAGGAATATTTGAGGAAACGTAAACAGCGGAAACTGTCCAGCAGCTCTGAAGGGGATGAAGAGTACCGTTGGGATGAAGAAAATCCTGAAGATGAGGAGGAGGAAGAAGAAGAAGAGGAGTCCTTAAGTATCAGTGAGGATAGTGATGGGCCACAAAGGTTTAAGAAGTTGCCAGGCCGTACTAGGAGGGAAACAAAATTAAGGTCAGTTGATGAGCTGCAGTCAGGCCTAAGACGGAGTAAAAGGGCCACCAGAAACCGTATAAATTACCGACAATATGATTTGTCAGAATCAGAAACTGAGTCATTAAAACAGGAGAAATCAAATGCATCAGATGGGCGCTCAGATGAAAGTGATAAGGTTGAGTATTCTATGGGAAGTCAAGATTCTGATGACAATGATGATGATCAGGAACTGAAGGTTGATCAGCCTGTTGAGAATTATCCTCAAACAGTAGAAAAAGAGATAAATCAACCTTCTGAGAAATCAAATAGCCCAGTACAAGATGAAGCTGAAGGTGTACGAAAAAGGCGTTTTCTTGACCTAAATGAGCTTGCCCCTGGTTCTGGTTTTGATGATGGTCCAAACACAATACTGAAAGATGATACAAATGACTTCTAA	2157	0.4613	MSQSSSPPIHNHRSSPQPHSQNDTPTPQNDTQTTTTTAAAIPAPAVTRKERPPRACTTRAAARLYADPPVIERRSKPAKKERNEESPQQQQQCASKIVTPLVNSPPPSQLPRWTLRSMWELASILNFLHVFRPLLNIAVEFSAEEFETALITPNNTLSDIHIPLLKAIPPVTRMALTRGTWVTVLCRKLRDWWHWVAEGEIPIVASQGAEVGMYNALDPGVRVVILKALCDIRVEQEDIRIFIDNSIKHGVQLSAFRKERVGGDSHGISYWYEDDPIIGHRLYREIRKVEVKKAKVKGSQCLPNASYQWETVATNLDEFQDVSEKLFSSKNRTEASLGKKLKNDMLPEIEKVHKRKERMLKKQHRQALLLDNFLSVDGLAPGRSLRDRKPVTYTFDDYDRSINEAIKITKRKPPSPEPTVRREGVTKPEPSTNGRWSGPSQAPQHVNFNALSPKSPDYDEIDDEHKSEPLDRSNRRRQRPQRYSEKEFVEAVSDNDADFDSDDDIVGEAVYDEEYLRKRKQRKLSSSSEGDEEYRWDEENPEDEEEEEEEEESLSISEDSDGPQRFKKLPGRTRRETKLRSVDELQSGLRRSKRATRNRINYRQYDLSESETESLKQEKSNASDGRSDESDKVEYSMGSQDSDDNDDDQELKVDQPVENYPQTVEKEINQPSEKSNSPVQDEAEGVRKRRFLDLNELAPGSGFDDGPNTILKDDTNDF*	719

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi17g0529	718	PANTHER	REMODELING AND SPACING FACTOR 1	47	711	IPR028938	GO:0006355\|GO:0031213
	Vvi17g0529	718	MobiDBLite	consensus disorder prediction	406	424	-	-
	Vvi17g0529	718	Pfam	DDT domain	123	168	IPR018501	-
	Vvi17g0529	718	MobiDBLite	consensus disorder prediction	494	509	-	-
	Vvi17g0529	718	MobiDBLite	consensus disorder prediction	1	103	-	-
	Vvi17g0529	718	MobiDBLite	consensus disorder prediction	561	591	-	-
	Vvi17g0529	718	MobiDBLite	consensus disorder prediction	1	41	-	-
	Vvi17g0529	718	MobiDBLite	consensus disorder prediction	532	557	-	-
	Vvi17g0529	718	MobiDBLite	consensus disorder prediction	87	103	-	-
	Vvi17g0529	718	MobiDBLite	consensus disorder prediction	406	718	-	-
	Vvi17g0529	718	MobiDBLite	consensus disorder prediction	604	639	-	-
	Vvi17g0529	718	MobiDBLite	consensus disorder prediction	510	531	-	-
	Vvi17g0529	718	MobiDBLite	consensus disorder prediction	456	493	-	-
	Vvi17g0529	718	MobiDBLite	consensus disorder prediction	680	694	-	-
	Vvi17g0529	718	MobiDBLite	consensus disorder prediction	430	451	-	-
	Vvi17g0529	718	MobiDBLite	consensus disorder prediction	69	86	-	-
	Vvi17g0529	718	MobiDBLite	consensus disorder prediction	662	679	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi17g0529	Vvi-Chr17	5874366	5894369	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	DDT	Vvi17g0529		DDT	3.5e-06	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi17g0529	-		-	vvi:100243405	1307.35