Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0526 ATGGTGAGACCACCATGTTGTGATAAACTGAATGTGAAGAGGGGTCTTTGGACAGCAGAGGAGGATGCAAAGATACTTGCCCATGTATCAAAACATGGGACGGGCAACTGGACAGCAGTTCCCAAAAAAGCAGGACTGAGAAGATGCGGGAAGAGTTGCAGGCTAAGGTGGACTAATTATTTGAGGCCTGATCTGAAGCATGAGAGCTTTACACCCCAAGAAGAGGAGTTGATTGTTAGACTTCATGCAACCATAGGCAGCAGGTGGTCTATAATAGCCCAACAGCTTCCTGGGAGAACAGATAATGACGTAAAGAACTACTGGAACACCAAGCTGAGAAAGAAGCTCTCTGAAATGGGGATTGATCCCATTACCCATAAACCCTTCTCTCAGATCCTTGCTGATTATGGAAACATTGGAGGCCTCCCAAAGAATGGAACCCGAATTGGGTCTCTCACCAGAGACTTGAAGAATGCTCTCATGTTGAAATCAGACCAATCATCAGCAATCACTTCAGAAGAATTCTCAAAACCAGAAGCAGCTCAAGAAATCTTCTTGACCAACAATCGTAACAGCCACGATAACCCGTCAATGAATCTTCTCACTCAGCTTAAAGCCATAAAACTGGTCACAGAAGCCTCAAGTTGCATCCACCATGGAAACATCTCTTCATTGTCGTCACCATCATCATCTTCTACATGCTTGACCCCAAAAGCAAAGTCACTCCATACATTTAGCTGGAGCGACTTCCTTCTAGAGGATGCATTTTTATCATCTGATCCGCAAGAGCAAGAAAACATGTCAAAGGGTAACTTGGACCTGCAGAGTGAGCCGAATGCAGATGGACAACGGCAAGTTGACCCAATTGAAGAGATGACCAACACAGTCCTTAGCAATGGCGCCTCTGAAGCTTCATCATCCTATGATAGTTCATTTCTGGAAGCCATGCTAGACCGAGAAAACGATATGTTCTTGGAGTTCCCTAGCCTTCTGGAGGAACCTTTCTACTACTGA 1014 0.4507 MVRPPCCDKLNVKRGLWTAEEDAKILAHVSKHGTGNWTAVPKKAGLRRCGKSCRLRWTNYLRPDLKHESFTPQEEELIVRLHATIGSRWSIIAQQLPGRTDNDVKNYWNTKLRKKLSEMGIDPITHKPFSQILADYGNIGGLPKNGTRIGSLTRDLKNALMLKSDQSSAITSEEFSKPEAAQEIFLTNNRNSHDNPSMNLLTQLKAIKLVTEASSCIHHGNISSLSSPSSSSTCLTPKAKSLHTFSWSDFLLEDAFLSSDPQEQENMSKGNLDLQSEPNADGQRQVDPIEEMTNTVLSNGASEASSSYDSSFLEAMLDRENDMFLEFPSLLEEPFYY* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0526 337 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi17g0526 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vvi17g0526 337 CDD SANT 69 112 IPR001005 -
Vvi17g0526 337 Gene3D - 69 127 - -
Vvi17g0526 337 MobiDBLite consensus disorder prediction 260 285 - -
Vvi17g0526 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vvi17g0526 337 SMART sant 66 114 IPR001005 -
Vvi17g0526 337 SMART sant 13 63 IPR001005 -
Vvi17g0526 337 FunFam Transcription factor RAX3 7 67 - -
Vvi17g0526 337 CDD SANT 17 61 IPR001005 -
Vvi17g0526 337 PANTHER F14D16.11-RELATED 1 337 - -
Vvi17g0526 337 Gene3D - 7 67 - -
Vvi17g0526 337 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Vvi17g0526 337 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi17g0526 337 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi17g0526 337 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vvi17g0526 337 FunFam transcription factor MYB80 69 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0526 Vvi-Chr17 5860757 5862296 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0526 1 333 MYB Transcription Factor Family AT3G28470 46.131 4.01e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi17g0526 Myb_DNA-binding 9.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0526 K09422 - vvi:104882320 662.914