Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0523 ATGGATCCTCCACTCATCAATGAGTCTTCCTTCTCTGCGGCCAATCCCTCCGCCTACTCACTAGCTGAGATTTGGCCTTTTCCCGTCAACTCTGCCTCTGCAATTGGGGAACCCACTGCCGGGTTGGGTCTCAGGATCGCTAATTTTGGCCAAATTATGGGTCAATTTGCAGATAGCTCTGCAAATCGTGACGTGTCTGTTGATGAATCGACTGTGACGGAGCAGAGTGGGAGTCGTGGCGGTGGAAGGAAGAGGAGGGATGTGAGTTCGGAGGATGAGTCTTCCAAGATTGTTTCTACTAGTAGTGGCAGTGGCATGAATGCATCGAATGGTAAACGTATGAAAATATCAAGAACTCCTGATGAAAATGGTGGTTCAAAAGCAGAATTAGAAGCTAGTTCAGTGGCTGGTGAAAAGCCCGCTGAAGAATCTAAACCTGCTGAGCAGTCTAAGCAAGACTATATCCATGTGAGAGCAAGAAGGGGTCAAGCTACTGATAGCCATAGTCTAGCAGAGCGAGCTAGGAGAGAAAAGATCAGTGAGAGGATGAAGATTCTTCAAGATTTGGTTCCTGGATGTAATAAGGTTATTGGAAAAGCACTTGTCCTTGATGAGATAATCAACTACATCCAGTCACTACAGCGTCAAGTTGAGTTCCTGTCAATGAAGCTTGAAGCAGTTAATTCAAGGATGAACCATACTGTTGAAGGATTTCCTTTGAAAGATCTTGGGGTACAGACATTTGATGCTGCTGCAATGATATATGGATCACAAGCAACCAGGGAATATGCTCAAGGATCGCAACCTGAATGGCTACATATGCAGGTTGGTGGCAGTATTGAAAGAGCATCCTAG 855 0.455 MDPPLINESSFSAANPSAYSLAEIWPFPVNSASAIGEPTAGLGLRIANFGQIMGQFADSSANRDVSVDESTVTEQSGSRGGGRKRRDVSSEDESSKIVSTSSGSGMNASNGKRMKISRTPDENGGSKAELEASSVAGEKPAEESKPAEQSKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNHTVEGFPLKDLGVQTFDAAAMIYGSQATREYAQGSQPEWLHMQVGGSIERAS* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0523 284 Coils Coil 210 230 - -
Vvi17g0523 284 Gene3D - 160 236 IPR036638 GO:0046983
Vvi17g0523 284 CDD bHLH_AtBPE_like 153 238 - -
Vvi17g0523 284 MobiDBLite consensus disorder prediction 61 153 - -
Vvi17g0523 284 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 72 258 IPR024097 GO:0006355
Vvi17g0523 284 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 213 IPR011598 GO:0046983
Vvi17g0523 284 MobiDBLite consensus disorder prediction 79 93 - -
Vvi17g0523 284 FunFam Basic helix-loop-helix transcription factor 160 232 - -
Vvi17g0523 284 MobiDBLite consensus disorder prediction 136 153 - -
Vvi17g0523 284 MobiDBLite consensus disorder prediction 94 114 - -
Vvi17g0523 284 Pfam Helix-loop-helix DNA-binding domain 167 214 IPR011598 GO:0046983
Vvi17g0523 284 SMART finulus 169 219 IPR011598 GO:0046983
Vvi17g0523 284 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 233 IPR036638 GO:0046983
Vvi17g0523 284 MobiDBLite consensus disorder prediction 61 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0523 Vvi-Chr17 5835144 5839042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0523 1 284 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 56.014 1.42e-89 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi17g0523 HLH 2.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0523 - - vvi:100256975 544.273