Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0520 ATGCCGTCCCAGGCGGATCTGGACCGTCAGATCGAGCACTTGATGGAGTGCAAGCCGTTGCCGGAGGCGGAGGTCAAGGCTTTATGCGAGCAGGCGAAGTCAGTTTTGGTCGAGGAATGGAATGTGCAGCCGGTGAAGTGTCCGGTCACGGTGTGCGGAGATATTCATGGGCAGTTCCACGATCTCATCGAGCTGTTCCGGATCGGAGGGAAAGCTCCCGAAACCAATTATCTCTTTATGGGAGATTATGTGGATCGAGGATACTACTCAGTGGAGACTGTTTCGCTTTTAGTATCCCTGAAAGTTCGATATAGAGATAGAATTACAATTCTGAGAGGAAATCATGAGAGCCGGCAAATAACTCAAGTGTATGGTTTTTATGATGAATGCTTGAGAAAATATGGGAATGCAAATGTCTGGAAATATTTCACCGACCTTTTTGATTATCTACCTCTTACAGCTCTTATTGAGAGCCAGGTCTTCTGCTTGCATGGTGGACTCTCCCCATCATTGGATACATTAGATAATATACGTGCCTTGGACCGGATACAGGAGGTTCCTCATGAGGGCCCAATGTGTGATCTTTTGTGGTCTGATCCTGATGACCGATGTGGGTGGGGAATTTCCCCTAGGGGAGCTGGATACACCTTTGGCCAGGATATAGCTTCACAGTTTAACCACACGAATGGGCTTACTCTTATTTCTAGAGCTCACCAGCTTGTTATGGAAGGTTACAATTGGTGTCAGGAGAAGAATGTGGTGACAGTGTTCAGTGCACCAAATTACTGCTATCGATGTGGAAATATGGCTGCAATTCTTGAGATTGGCGAGAATATGGATCAGAATTTCCTTCAATTTGACCCAGCACCTCGACAGATTGAACCTGACACCACACGCAAAACTCCTGACTATTTTTTGTAA 921 0.4625 MPSQADLDRQIEHLMECKPLPEAEVKALCEQAKSVLVEEWNVQPVKCPVTVCGDIHGQFHDLIELFRIGGKAPETNYLFMGDYVDRGYYSVETVSLLVSLKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESQVFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIASQFNHTNGLTLISRAHQLVMEGYNWCQEKNVVTVFSAPNYCYRCGNMAAILEIGENMDQNFLQFDPAPRQIEPDTTRKTPDYFL* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0520 306 Pfam Calcineurin-like phosphoesterase 48 239 IPR004843 GO:0016787
Vvi17g0520 306 ProSitePatterns Serine/threonine specific protein phosphatases signature. 111 116 IPR006186 GO:0016787
Vvi17g0520 306 CDD MPP_PP2A_PP4_PP6 6 290 - -
Vvi17g0520 306 SUPERFAMILY Metallo-dependent phosphatases 4 293 IPR029052 -
Vvi17g0520 306 FunFam Serine/threonine-protein phosphatase 1 306 - -
Vvi17g0520 306 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 5 306 IPR047129 GO:0004722
Vvi17g0520 306 PRINTS Serine/threonine phosphatase family signature 174 201 IPR006186 GO:0016787
Vvi17g0520 306 PRINTS Serine/threonine phosphatase family signature 77 104 IPR006186 GO:0016787
Vvi17g0520 306 PRINTS Serine/threonine phosphatase family signature 252 268 IPR006186 GO:0016787
Vvi17g0520 306 PRINTS Serine/threonine phosphatase family signature 48 75 IPR006186 GO:0016787
Vvi17g0520 306 PRINTS Serine/threonine phosphatase family signature 230 250 IPR006186 GO:0016787
Vvi17g0520 306 PRINTS Serine/threonine phosphatase family signature 145 171 IPR006186 GO:0016787
Vvi17g0520 306 PRINTS Serine/threonine phosphatase family signature 110 134 IPR006186 GO:0016787
Vvi17g0520 306 Gene3D - 2 306 IPR029052 -
Vvi17g0520 306 SMART pp2a_7 20 290 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0520 Vvi-Chr17 5815120 5818302 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0520 49 225 Calmodulin-binding Proteins AT5G63870 37.850 1.07e-30 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0520 K04382 - vvi:100267243 646.736