Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0517 ATGGCGATCTTGGTTGGTCCTGGATGTAGTATTCGGCAGCAGCCTGATCTTGTTGCCTATGGTGAGGATGATGAAGTGCTGCTGTGGGATGTGTTCTTCATGGAATTTCATGTTAGAGATGCGGTCTTAAACTACTGGCTGGAAGATGATAGTCCTTTAAGACTCCGTGATGTGAACACGATCGGTCCTATGAGAAGGAGATTGTTTGTGGTTAGGCGTGATCAGTTATTAAGAAGCCATAGTCTTGCATTCGAACATGTATCTCTCCTGCTTTTTCTTATGGGTATACCTTCAATCTTGCATGCATCATTCGTGCAAGAGATACGCTCCGGTGCTGTTCTGTTGGCGAATGAAACCACCAACATTGGTCGTCGCATAATTCCTATGGTGGTGGACATTGATCTCTGGTTTATGGGCGAGGAAGAGGAAGAGGAAGAAGAAGAGGAAGAGGAAGAGGAAGAAGATGAAGATGAATTAGATGAAATTATGGCTGAGGTTATGAGGTCTTCATTGAATGATGTGACCGGCTTGTCTGTGCCTGCAACTAGAGCTTCCATTGAGGCACTTGAGAAGATCAAGTTTGAGGATGTAAATTCCACAGACAAGTGTATAATATGCCTAGAAGAGTTCGCAACGGAATCGGAAGTTAGTCGGATGCCATGTTCGCATGTTTATCACAAAGATTGCATTATACAATGGTTGGAGAGGAGTCACATGTGTCCCTTGTGCCGCTTCAAGATGCCTGCCATCTCAAGTTGA 759 0.4453 MAILVGPGCSIRQQPDLVAYGEDDEVLLWDVFFMEFHVRDAVLNYWLEDDSPLRLRDVNTIGPMRRRLFVVRRDQLLRSHSLAFEHVSLLLFLMGIPSILHASFVQEIRSGAVLLANETTNIGRRIIPMVVDIDLWFMGEEEEEEEEEEEEEEEDEDELDEIMAEVMRSSLNDVTGLSVPATRASIEALEKIKFEDVNSTDKCIICLEEFATESEVSRMPCSHVYHKDCIIQWLERSHMCPLCRFKMPAISS* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0517 252 CDD RING-H2_PA-TM-RING 203 244 - -
Vvi17g0517 252 SMART ring_2 203 243 IPR001841 -
Vvi17g0517 252 Pfam Ring finger domain 201 244 IPR001841 -
Vvi17g0517 252 FunFam Uncharacterized protein 167 250 - -
Vvi17g0517 252 ProSiteProfiles Zinc finger RING-type profile. 203 244 IPR001841 -
Vvi17g0517 252 Coils Coil 137 165 - -
Vvi17g0517 252 SUPERFAMILY RING/U-box 202 248 - -
Vvi17g0517 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 145 248 - -
Vvi17g0517 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 250 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0517 Vvi-Chr17 5799375 5800133 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0517 165 248 C3H Transcription Factor Family AT1G18760 40.698 1.09e-18 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0517 - - vvi:104882411 473.011