Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi17g0517 | ATGGCGATCTTGGTTGGTCCTGGATGTAGTATTCGGCAGCAGCCTGATCTTGTTGCCTATGGTGAGGATGATGAAGTGCTGCTGTGGGATGTGTTCTTCATGGAATTTCATGTTAGAGATGCGGTCTTAAACTACTGGCTGGAAGATGATAGTCCTTTAAGACTCCGTGATGTGAACACGATCGGTCCTATGAGAAGGAGATTGTTTGTGGTTAGGCGTGATCAGTTATTAAGAAGCCATAGTCTTGCATTCGAACATGTATCTCTCCTGCTTTTTCTTATGGGTATACCTTCAATCTTGCATGCATCATTCGTGCAAGAGATACGCTCCGGTGCTGTTCTGTTGGCGAATGAAACCACCAACATTGGTCGTCGCATAATTCCTATGGTGGTGGACATTGATCTCTGGTTTATGGGCGAGGAAGAGGAAGAGGAAGAAGAAGAGGAAGAGGAAGAGGAAGAAGATGAAGATGAATTAGATGAAATTATGGCTGAGGTTATGAGGTCTTCATTGAATGATGTGACCGGCTTGTCTGTGCCTGCAACTAGAGCTTCCATTGAGGCACTTGAGAAGATCAAGTTTGAGGATGTAAATTCCACAGACAAGTGTATAATATGCCTAGAAGAGTTCGCAACGGAATCGGAAGTTAGTCGGATGCCATGTTCGCATGTTTATCACAAAGATTGCATTATACAATGGTTGGAGAGGAGTCACATGTGTCCCTTGTGCCGCTTCAAGATGCCTGCCATCTCAAGTTGA | 759 | 0.4453 | MAILVGPGCSIRQQPDLVAYGEDDEVLLWDVFFMEFHVRDAVLNYWLEDDSPLRLRDVNTIGPMRRRLFVVRRDQLLRSHSLAFEHVSLLLFLMGIPSILHASFVQEIRSGAVLLANETTNIGRRIIPMVVDIDLWFMGEEEEEEEEEEEEEEEDEDELDEIMAEVMRSSLNDVTGLSVPATRASIEALEKIKFEDVNSTDKCIICLEEFATESEVSRMPCSHVYHKDCIIQWLERSHMCPLCRFKMPAISS* | 253 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi17g0517 | 252 | CDD | RING-H2_PA-TM-RING | 203 | 244 | - | - | |
Vvi17g0517 | 252 | SMART | ring_2 | 203 | 243 | IPR001841 | - | |
Vvi17g0517 | 252 | Pfam | Ring finger domain | 201 | 244 | IPR001841 | - | |
Vvi17g0517 | 252 | FunFam | Uncharacterized protein | 167 | 250 | - | - | |
Vvi17g0517 | 252 | ProSiteProfiles | Zinc finger RING-type profile. | 203 | 244 | IPR001841 | - | |
Vvi17g0517 | 252 | Coils | Coil | 137 | 165 | - | - | |
Vvi17g0517 | 252 | SUPERFAMILY | RING/U-box | 202 | 248 | - | - | |
Vvi17g0517 | 252 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 145 | 248 | - | - | |
Vvi17g0517 | 252 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 169 | 250 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi17g0517 | Vvi-Chr17 | 5799375 | 5800133 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi17g0517 | 165 | 248 | C3H Transcription Factor Family | AT1G18760 | 40.698 | 1.09e-18 | 80.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi17g0517 | - | - | vvi:104882411 | 473.011 |