Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0499 ATGGCGATTAGGGTTCTAGCGCGACCTGCTGTCCACAATCTCAAATCAATCGTAGCTTTCCAAACCCCAAAACCCCAATCTCTCTCCACGGTCAACCAAATCCCAGTTTCCCGCAACATTTCCCCACAATCCCCGTTTAGGAAACAGATTTCGCTCTTCAATCTCTTCCAAAGGCACGGGTTTCCACCTTCCCAACTTCACGGATTCCTAAAAAAAAATCAAATTTTCCAGAATTATAATCTACTTGAACTCGAAAAATCCTTGGGGATTCTCTTCTCCTTCCAAATTCCGCAGAAATTTATCCTTTCATTGATAAGTGATTGTCCTAGGCTTTTGGAATTTGAATTTTTGAAGAAATGGGAAATGGGTATTGCGAAATTGGGGGTCTCGGGTGTGTCGCCGTTGATGATTCGGAATGTTTTGGAATTCTCAAGAAGGTTTGAGTTGGACCCTGATGATGTTTCTAGGTGTGTCAAGGTTTTGAAGGGTTTAGGGTTTAGTGATGGTACTGTGGATAGGATTTTAGAGGAGTTTCCAAGAGTAATCATGTCGAATGAGAGTGAAATTCAAAGGAAAATTCAATTCTTGCTGGGAATTGGGATTCCAGAATCTGGGATTGATGGGATTTTTCATTCCTTGCCTGGGATTTTAGGTTTGGGGATTGAAGATAGATTAGAGCCATTGTTGGATGAGTTTGGCAAATTGGGTTTTAGTGAGGATGTGGTTAGGCGGGAGATTTCTAGAGAGCCGAGAATGCTTGGAATGGAATTGGGAGAAATGTCACGATGTTTGGAATTGGTAGGGACTTTAAAATGCCGAGTGCCAATCAAGGAGAAAATCTTCAGGGAGGGGGCGCTTAGAGCTGGGTTTGAAGTGAAACTCAGAGTTGATTGCTTGTGTAGGTATGGCTTAATTCGAAGAGAAGCATTTGAGGTGTTGTGGAAAGAGCCAAGGGTGATCATATATGAGATAGAGGACATTGAGGAGAAGATTGAGTTTTTGGTACACAGAATGAGATACAATGTTGGTTGTTTAATTGAAGTTCCGGAGTATTTGGGTGTGAATTTTGATAAACAGATTGTTTCTCGATGGAATGTGATAGAGTATCTAAGATCAAAAGGGGGGCTTGGTTGCAAGGTGGGGTTGAAGGGTTTGATAAAACCCAGTAGGCTAAGATTCTATAACCTTTACGTGAAGCCGTATCCAGAGTGCGAAAAAATGTTTGGTAGATTCTCAAGAGATGTTGAAGTTAGAAACAGACATCCTGTTGGATTGTGGAAGCTTATGAAGCCACAAAAGCACCCAGAGTCCAAAGATGATGTGAAAAACATGAAGTGCTTTGTGGAGTCATTGTAG 1356 0.4167 MAIRVLARPAVHNLKSIVAFQTPKPQSLSTVNQIPVSRNISPQSPFRKQISLFNLFQRHGFPPSQLHGFLKKNQIFQNYNLLELEKSLGILFSFQIPQKFILSLISDCPRLLEFEFLKKWEMGIAKLGVSGVSPLMIRNVLEFSRRFELDPDDVSRCVKVLKGLGFSDGTVDRILEEFPRVIMSNESEIQRKIQFLLGIGIPESGIDGIFHSLPGILGLGIEDRLEPLLDEFGKLGFSEDVVRREISREPRMLGMELGEMSRCLELVGTLKCRVPIKEKIFREGALRAGFEVKLRVDCLCRYGLIRREAFEVLWKEPRVIIYEIEDIEEKIEFLVHRMRYNVGCLIEVPEYLGVNFDKQIVSRWNVIEYLRSKGGLGCKVGLKGLIKPSRLRFYNLYVKPYPECEKMFGRFSRDVEVRNRHPVGLWKLMKPQKHPESKDDVKNMKCFVESL* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0499 451 FunFam Transcription termination factor MTERF15 mitochondrial 186 408 - -
Vvi17g0499 451 SMART mt_12 243 273 IPR003690 GO:0003690|GO:0006355
Vvi17g0499 451 SMART mt_12 172 202 IPR003690 GO:0003690|GO:0006355
Vvi17g0499 451 SMART mt_12 207 238 IPR003690 GO:0003690|GO:0006355
Vvi17g0499 451 SMART mt_12 310 341 IPR003690 GO:0003690|GO:0006355
Vvi17g0499 451 SMART mt_12 342 376 IPR003690 GO:0003690|GO:0006355
Vvi17g0499 451 SMART mt_12 137 167 IPR003690 GO:0003690|GO:0006355
Vvi17g0499 451 PANTHER CGI-12 PROTEIN-RELATED 45 401 IPR003690 GO:0003690|GO:0006355
Vvi17g0499 451 Pfam mTERF 295 375 IPR003690 GO:0003690|GO:0006355
Vvi17g0499 451 Pfam mTERF 61 267 IPR003690 GO:0003690|GO:0006355
Vvi17g0499 451 Gene3D Transcription termination factor 3, mitochondrial 186 413 IPR038538 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vvi17g0499 mTERF 3.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0499 - - vvi:100256963 897.116