Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0498 ATGCATGGCTTGGGCGGTGGTGAGAGGGTTCCTCTTTTGGGTAGAGAAGGAGGAAGAAAGAGAAATGACACTTTGGTGAATGGTCATTTGACAGACCTCGAGCATGGGGATGCAATACCGGCTGCTAACGTGGGGTTTTGCAGAGTGTTGTCTCTGGCAAAGCCCGATGCAGGAAAACTGGTTCTTGCTACAATTGCTCTGTTGATTGCGTCCACATCAAGTATTCTGATTCCGAAGTTTGGTGGAAAAATAATAGACATTGTATCAAGGGAGATCATAACACCAGAACAGAAAACCGAAGCTCTGAATGCAGTCAAGAACACTATACTAGAGATCTTCTTAATTGTTATAGTTGGTTCCATTTGCACAGCACTTCGGGCATGGTTGTTTTCTTCTGCTAGTGAAAGGGTTGTAGCTCGGCTGAGAAAGAACTTATTCAGTCACCTTATTCAGCAAGAAATAGCCTTTTTTGATATTACTCGGACAGGGGAGCTTCTAAGCAGATTATCTGAAGATACCCAGATCATAAAAAATGCTGCAACTACCAATCTTTCTGAGGCCCTAAGGAATCTATCGACTGCATTTATTGGTCTTGGTTTCATGTTTGCGACATCATGGAAGTTGACATTGTTGGCTTTGGCTATTGTTCCTGCTATCTCTGTGGCTGTGCGTAAATTTGGCCGTTTTCTTCGAGAACTTTCTCACAAGACTCAAGCTGCAGCTGCATTAGCTGCTTCAATTGCTGAGGAATCCTTTGGTGCTATACGCACAGTGAGATCTTTTGCTCAAGAAGCTTACGAAATTTCACGCTATTCTAGTCAAGTTGAAGAGACATTGAATCTTGGAATTAAACAAGCTAGAGTTGTTGGACTTTTCTTTGGTGGCCTTAATGCTGCATCCACACTATCAGTCATCGTAGTAGTGATATATGGAGCTAATTTGACGATCAATGGCTCCATGAGCCCTGGTGCTCTTACATCCTTCATTCTTTATAGCCTGACAGTTGGATCCTCTGTATCTGGACTGTCTGGGTTATACACAGTAGCAATGAAAGCTGCAGGAGCCAGTAGGCGGGTTTTCCAGCTTCTGGATCGTGTCTCATCGATGCCTAAGTCGGGCAACAAATGTCCTTTGGGAGACCAAGATGGAGAAGTAGAGTTAAATGATGTCTGGTTCGCCTATCCATCTCGTCCTGACCATATGGTACTCAAGGGAATAACATTAAAACTGCAGCCTGGTTCAAAGATTGCTCTTGTTGGTCCAAGTGGTGGTGGAAAAACCACAATAGCAAACTTGATTGAAAGGTTTTATGATCCCATCAAGGGAAGGATTTTACTAAATGGGGTTCCACTGGTGGAAATATCACATGAACATCTACACAGAAAGATCAGTATAGTGAGCCAGGAGCCTGTTCTTTTCAACTGCTCCATAGAGGAGAACATTGCATATGGTTATGAAGGCAAAGCCAGCAGTGCTGATGTAGAAAATGCAGCTAAAATGGCCAATGCCCATGAGTTCATATCAAAATTTTCTGAAAAATATCAAACCCATGTTGGAGAACGTGGTGTAAGGCTCTCAGGAGGCCAGAAACAGAGAGTAGCAATTGCAAGGGCTCTATTGATGAACCCAAGGGTTCTCCTCCTGGATGAAGCCACAAGTGCTCTGGATGCTGAAAGCGAATACCTGGTGCAGGATGCCATGGATTCTCTGATGAAGGGCAGGACTGTTCTAGTTATAGCCCATAGGCTCTCAACTGTCAAGAGTGCAGACACCGTTGCCGTAGTTTCAGATGGTGAGATTGTTGAAAGTGGCACACATGACGAGCTCCTCGACAAGGATGGCATTTACACTGCATTAGTAAGGAGGCAGCTGCAAGGACCAAGAAATGAAGTCTAG 1896 0.4415 MHGLGGGERVPLLGREGGRKRNDTLVNGHLTDLEHGDAIPAANVGFCRVLSLAKPDAGKLVLATIALLIASTSSILIPKFGGKIIDIVSREIITPEQKTEALNAVKNTILEIFLIVIVGSICTALRAWLFSSASERVVARLRKNLFSHLIQQEIAFFDITRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALAIVPAISVAVRKFGRFLRELSHKTQAAAALAASIAEESFGAIRTVRSFAQEAYEISRYSSQVEETLNLGIKQARVVGLFFGGLNAASTLSVIVVVIYGANLTINGSMSPGALTSFILYSLTVGSSVSGLSGLYTVAMKAAGASRRVFQLLDRVSSMPKSGNKCPLGDQDGEVELNDVWFAYPSRPDHMVLKGITLKLQPGSKIALVGPSGGGKTTIANLIERFYDPIKGRILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGYEGKASSADVENAAKMANAHEFISKFSEKYQTHVGERGVRLSGGQKQRVAIARALLMNPRVLLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVKSADTVAVVSDGEIVESGTHDELLDKDGIYTALVRRQLQGPRNEV* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0498 631 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 48 626 IPR039421 -
Vvi17g0498 631 MobiDBLite consensus disorder prediction 1 20 - -
Vvi17g0498 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 623 IPR027417 -
Vvi17g0498 631 CDD ABC_6TM_AtABCB27_like 63 359 - -
Vvi17g0498 631 CDD ABC_MTABC3_MDL1_MDL2 385 623 - -
Vvi17g0498 631 FunFam ABC transporter B family member 25 383 625 - -
Vvi17g0498 631 ProSitePatterns ABC transporters family signature. 525 539 IPR017871 GO:0005524|GO:0016887
Vvi17g0498 631 PIRSF ABC_prm/ATPase_B 22 631 - -
Vvi17g0498 631 Pfam ABC transporter 403 553 IPR003439 GO:0005524
Vvi17g0498 631 Gene3D - 383 624 IPR027417 -
Vvi17g0498 631 FunFam ABC transporter B family member 25 112 382 - -
Vvi17g0498 631 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 61 351 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi17g0498 631 SMART AAA_5 412 606 IPR003593 GO:0016887
Vvi17g0498 631 SUPERFAMILY ABC transporter transmembrane region 48 364 IPR036640 GO:0005524|GO:0016020
Vvi17g0498 631 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 385 622 IPR003439 GO:0005524
Vvi17g0498 631 Gene3D ABC transporter type 1, transmembrane domain 113 382 IPR036640 GO:0005524|GO:0016020
Vvi17g0498 631 Pfam ABC transporter transmembrane region 60 335 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0498 Vvi-Chr17 5620229 5626937 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0498 113 623 Calmodulin-binding Proteins AT2G36910 38.889 3.14e-101 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0498 - - vvi:100248338 1184.09