Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0493 ATGGAGTTTTTCTTCACATCCATTGCCAGATCCATCACCAAGCTCAGCAAAGCCTACGATTCGCTTGATCCAGAGGGAAATATCACCATCAAGTGGGATGTAATGAGCTGGACTCCAGATGGTTATGTTGCTGTTGTTACAATGTTCAACTTCCAGCAATATCGCCACATTCAAGCACCAGGGTGGTCACTTGGATGGTCATGGGCCAAAAAGGAAGTAATCTGGAGTATGATGGGAGGACAAACAACAGAACAAGGGGATTGTTCAAGATTCAAAGGGAATGTACCACATTGCTGTAAAAAGGATCCAACAGTTGTGGATTTACTGCCAGGAACTCCTTACAACCAGCAGATTGCAAATTGCTGCAAAGGGGGTGTTATAAACTCATGGGTCCAGGACCCAGCTAATGCAGCAAGCTCATTCCAGGTCAGTGTGGGTGCAGCTGGGACTACCAACAAAACTGTCAAATTGCCAAAGAACTTCACGTTGAGAGCTCCAGGGCCTGGATATACTTGTGGGCCTGCCAAGATTGTAAAACCAACCAAGTTTACCACGGCGGATCAGAGGAGAGTCACTCAGGCTTTGATGACTTGGAATGTTACTTGCACGTATTCACAATTCCTGGCTCAGAAGACGCCTACATGTTGTGTCTCATTGTCATCGTTCTATAATAACACTATAGTATCCTGCCCAACTTGCACCTGTGGCTGTCAAAATAATCTAACTCATCCAGGGAGCTGTGTAGACCCAAACAATCCATATTTAGCTTCAGTCGTTGAAGGCTCAGGTAAAACCAGTTATCAGCCTCTCGTCCAGTGTACCAGCCATATGTGCCCAATCCGTGTCCATTGGCATGTTAAGCTCAACTACAAGGATTACTGGCGGGTGAAGATCACAATCACAAATTTCAATTACAGAATGAACTACACCCAATGGAATCTTGTTGTTCAACATCCCAACTTTGATAATCTCACACAGATTTTCAGTTTTAATTACAAGTCATTAACTCCTTATGCAGCCATAAATGACACTGCCATGTTATGGGGAGTCAAGTTTTACAATGATTTGCTCTCTCAAGCTGGTCCTCTTGGGAATGTGCAGTCAGAGCTACTATTTCGAAAGGATAAAGCAACTTTCACTTTTGATAAGGGATGGGCTTTCCCTCGAAGAATTTATTTCAATGGTGATAATTGCGTCATGCCTCCACCAGATGCCTACCCATGGTTGCCAAATGCCAGCTCCCGACCCACTGTCTCTCTCCTTTACTCAATCTTGACAATCTTGGCAGTTTCTGTCATTGTATTGGCTTATGCTTAG 1317 0.4419 MEFFFTSIARSITKLSKAYDSLDPEGNITIKWDVMSWTPDGYVAVVTMFNFQQYRHIQAPGWSLGWSWAKKEVIWSMMGGQTTEQGDCSRFKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVINSWVQDPANAASSFQVSVGAAGTTNKTVKLPKNFTLRAPGPGYTCGPAKIVKPTKFTTADQRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVSCPTCTCGCQNNLTHPGSCVDPNNPYLASVVEGSGKTSYQPLVQCTSHMCPIRVHWHVKLNYKDYWRVKITITNFNYRMNYTQWNLVVQHPNFDNLTQIFSFNYKSLTPYAAINDTAMLWGVKFYNDLLSQAGPLGNVQSELLFRKDKATFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASSRPTVSLLYSILTILAVSVIVLAYA* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0493 438 PIRSF COBRA 1 438 IPR006918 GO:0010215|GO:0016020
Vvi17g0493 438 PANTHER PROTEIN COBRA 8 426 IPR006918 GO:0010215|GO:0016020
Vvi17g0493 438 Pfam COBRA-like protein 42 205 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0493 Vvi-Chr17 5544882 5548137 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0493 30 421 COBRA Gene Family AT5G60920 82.234 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0493 - - vvi:100263971 922.154