Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0492 ATGACTATAAACCAAATGAGCGTGACAGATATATCTATTATAAATCATAGGAACATTCACATAATGGAATTCAATAGAGTTGCATACTCAATTGTCTCAGCTGTCTTCTTTAGTATGGTCTTATCTCCTGCAGTGGCATATGATCCGCTGGATCCAAATGGGAACATAACGATCAAATGGGATGTTATGTCTTGGACCTCAGATGGTTATGTGGCAGTGGTGACAATGAGCAACTTCCAAATGTATCGGCACATCATGAGCCCTGGTTGGACCTTAGGATGGATATGGGCTAAGAAAGAAGTAATCTGGTCTATGGTGGGAGCGCAAGCTACTGAACAAGGAGACTGTTCAAAGTTCAAAGGGAACATCCCACACTGTTGTAAGAGGAATCCCACAGTGATCGACTTGCTGCCTGGAGTCCCTTACAACCAACAAATTGCCAATTGTTGCAAGGGAGGCGTTGTAGCATCATGGGGCCAGGACTCGTCTGCTGCAGTCTCATCCTTTCAACTGAGTGTCGGGCTTTCTGGCACGTCAAATAAAACAGTAAGACTGCCCAAGAATTTTACTTTGCTTGGTCCAGGACCTGGCTACACTTGTGGCCAAGCAAAAACTGTGCCATCCTCCATCTTCCTCTCTTCAGATGGCCGGAGAAAAACTCAGGCATTGATGACATGGAATGTTACATGTACTTACTCACAGATGGTGGTCTCCAAGTATCCAAGCTGCTGTGTCTCCTTCTCATCTTTTTACAACTCAACAATCACCCCTTGTACATCCTGTGCCTGTGGTTGCCAGAACAAAAACAACTGCATCATGAGTGATACAAAAATTGAGAGCGTGGTGGGACTACACACTCCAACAAAGGATAATATGCCGCTGCTGCAGTGTACTCAACACAATTGCCCAGTCCGGGTGCACTGGCATGTGAAGGTCAATTACAAGGAGTATTGGCGTGTGAAGATTACCATCACTAATTTTAACTACAGAATGAACTACACGCAGTGGACGCTGGTTGCTCAGCATCCCAATCTGAATAATATCACACAAGTTTTCAGCTTTGCTTACAAGCCACTCATTCCATACACGTCCATAAATGACTCAGGTATGTTTTACGGCATAAAGTTCTATAATGATGTGCTAATGGAAGATGGGCCAGATGGAAACGTCCAGTCTGAAATGATTCTTCAGAAGGACAAGAACACATTCACATTGAAGGAGGGTTGGGCTTTCCCTCAGAGAATTTACTTCAATGGTGATGAATGCATGATGCCCCTTCCTGACTCGTACCCTTTGTTGGCGGGCTCTGCCCCTGCAAATCAAATTGCATTATCAACACTGGCTTCCCTAGTACTTTTGATATTGCTAGCATTTCAAGCTTTTGATCTCGGTGAACTTATTTTTGTCATGGAATTCAACAATTCTGCAAACCCAGTTCACCATACTCCCTTCGAAGCTAAAGATCGTTGCCAATGGCAGGACTGTTACTCATTCAGGGAGTTGAAGCACATTTTCTCAGTTGTCATATTTTTCATGATGGTTTCTCATGCAATTGCCTATGATCCACTGGATCCAACCGGAAACATAACAATAAAATGGGATGTTGTGTCTTGGACCCCAGATGGTTACGTGGCTCTGGTGACTATGAACAACTTCCAAATGTACCGGCACATCATGACCCCTGGCTGGACCCTATCATGGTCATGGGCTAAGAAAGAAGTGATCTGGTCAATGGTGGGAGCCCAAACAACAGAGCAAGGAGACTGTTCCAAGTTCAAAGCGAACATACCACACTGCTGTGAGAAAACCCCAACAGTTGTTGACTTGCTTCCTGGAGTTCCTTACAACCAACAAATTGCCAATTGTTGCAAGGCTGGTGTGGTGGCCGCCTGGGGGCAGGATCCTGCAGGATCAGTCTCCTCCTTTCAGGTGAGCGTTGGGCAAGCTGGGACTTCAAACAAAACAGTGAAACTTCCCAAGAATTTCACTTTGCTTGGTCCAGGACCAGGATACACTTGTGGCCCTGCCAAAATTGTCCCCTCCACCATCTACTTGACTCCTGATCATAGACGAAAAACTCAAGCAATGATGACTTGGAATGTTACCTGCACCTATTCTCAGTTTCTGGCGTCCAAAAACCCCACCTGTTGTGTTTCCTTCTCAAGTTTTTACAATGATACCATGACCCCATGCCCATCCTGCGCGTGTGGTTGCCGCAACAAGAACATGTGTATCTCAAGTGACTCAAAGAAACTGAAGGCGTTACACAATCCAAAGAGGAGCAATACACCATTGCTACAATGCACACATCATATGTGTCCCATACGGGTGCACTGGCATGTCAAGCTCAACTACAAGGATTATTGGCGAGTGAAGATCGCCATTACTAATTTTAACTATCGGATGAATTATACACAGTGGACACTTGTTGCACAGCATCCCAATCTCAACAATGTCACACAAGTATTTAGCTTTGATTACAAGCCTCTTGTCCCCTATGAATCCATAAATGACACTGGTATGTTCTATGGCATGAAATTCTACAATGACCTACTAGTGGAAGCCGGACAGCATGGAAATGTCCAGTCTGAGGTGCTTCTTCAGAAGAACAAGGATACATTTACTTTCAAGCAGGGATGGGCATTCCCTCGAAAAGTTTATTTTAATGGTGATGAGTGCAAGCTGCCCCCGCCTGATACATATCCATTTTTACCAAACTCTGCCCATGCAAATCCATTTGCCTTTTGGACAATGGCAGCTCCTCTGCTTTTGATGATACTGTACACCATTTGGTGA 2796 0.4467 MTINQMSVTDISIINHRNIHIMEFNRVAYSIVSAVFFSMVLSPAVAYDPLDPNGNITIKWDVMSWTSDGYVAVVTMSNFQMYRHIMSPGWTLGWIWAKKEVIWSMVGAQATEQGDCSKFKGNIPHCCKRNPTVIDLLPGVPYNQQIANCCKGGVVASWGQDSSAAVSSFQLSVGLSGTSNKTVRLPKNFTLLGPGPGYTCGQAKTVPSSIFLSSDGRRKTQALMTWNVTCTYSQMVVSKYPSCCVSFSSFYNSTITPCTSCACGCQNKNNCIMSDTKIESVVGLHTPTKDNMPLLQCTQHNCPVRVHWHVKVNYKEYWRVKITITNFNYRMNYTQWTLVAQHPNLNNITQVFSFAYKPLIPYTSINDSGMFYGIKFYNDVLMEDGPDGNVQSEMILQKDKNTFTLKEGWAFPQRIYFNGDECMMPLPDSYPLLAGSAPANQIALSTLASLVLLILLAFQAFDLGELIFVMEFNNSANPVHHTPFEAKDRCQWQDCYSFRELKHIFSVVIFFMMVSHAIAYDPLDPTGNITIKWDVVSWTPDGYVALVTMNNFQMYRHIMTPGWTLSWSWAKKEVIWSMVGAQTTEQGDCSKFKANIPHCCEKTPTVVDLLPGVPYNQQIANCCKAGVVAAWGQDPAGSVSSFQVSVGQAGTSNKTVKLPKNFTLLGPGPGYTCGPAKIVPSTIYLTPDHRRKTQAMMTWNVTCTYSQFLASKNPTCCVSFSSFYNDTMTPCPSCACGCRNKNMCISSDSKKLKALHNPKRSNTPLLQCTHHMCPIRVHWHVKLNYKDYWRVKIAITNFNYRMNYTQWTLVAQHPNLNNVTQVFSFDYKPLVPYESINDTGMFYGMKFYNDLLVEAGQHGNVQSEVLLQKNKDTFTFKQGWAFPRKVYFNGDECKLPPPDTYPFLPNSAHANPFAFWTMAAPLLLMILYTIW* 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0492 931 Pfam COBRA-like protein 70 233 IPR006918 GO:0010215|GO:0016020
Vvi17g0492 931 Pfam COBRA-like protein 543 706 IPR006918 GO:0010215|GO:0016020
Vvi17g0492 931 PANTHER PROTEIN COBRA 506 922 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0492 Vvi-Chr17 5529705 5543973 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0492 505 928 COBRA Gene Family AT3G02210 63.448 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0492 - - vvi:100258803 994.571