Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0488 ATGGGGTCTTGGAGCTACGTTTCACAGGAAAAGGAATTTGTATCTGATGCGACCGATTTGCAGCCCAATTCGTCTGCAAGAAGTAAAAATGTTTTCATGGGTTGGGAATTGAAAACCCCATGTGGTTATGGAAACAGCATTTTAGTGTCAAGTCAACAGGTCATTCAGAATCAGGGTTTTGGGGAATTTGGTATCCCTGAAATGGTCAGAAAACAATTGCCAGACAATTCAATTAGGGATGTTTCATGTGGCAAGGGTGGTGATGGAATAATGGTTAATTCGATTATGGTATCCCCAAATGTCTTTCCCAGAGATGACGAGTCAAGTTCGAAGCTCTCTAGCTCTGTTATGGAATCTAACAGCCAGGACTCTTTGCTCATCGATTTGAAGCTCGGAAGGTTTGCTGATCATAGTGATTCCCAAAATTGTAAACCATCCAAAGCAAACCCCAGTTTGCCATCGGCTGAGTCCTCTACACCAGCAAAGAGAGTTCGAGCTGTGGGGTTGAACTCTCAGACTGCCTTTTGCCAAGTTCATGGTTGTAACAAGGATCTTAGCAGCTCAAAAGACTACCACAAGAGGCACAAAGTTTGTGAAGTTCATTCCAAGACTGCCAAAGTCATTGTGAATGGCATTGAACAAAGGTTTTGTCAGCAATGCAGCAGGTTTCATTTGCTGGCTGAGTTTGATGATGGTAAGCGCAGCTGTCGCAAACGCCTTGCAGGCCACAATGAACGTCGGAGGAAACCCCAAGTTGGTATTCACCCTGGCAGGGCAGGGAGGTTGCTTCAATCATATAACGGCTATGCAGGTAATAGATTTCAGGGGACTACACTAACAACCGCATCCTTTATATGTCAAGATATACTCCCCAGTGGTCTATTGCCACCAGAGAAATATGGGATGAGTGACTGGTGCAAGCGGATAAAAGTTGAAGATGGAACTGACTATAGTCCTCAATCAACCATTCCTATAACCAATGGGCACCCACATCCAAAGTCCCTATTCCCTACTTTTGAATTTGAAAAACAATATTCTTCCTTTCAAGACAATGGAGCTAATACAGGAAGTATTTTCAGTGAACACAATAGCCGATATCCACATGATCTTGCAGATGCAAATTCTGGCCCACATTCTTTTTTCCAAGACACCTCATTAGGAAATGAAGACTTGTCTGTTTTTGACGCAGGATCTACTGTTCAGGCCTTATCAGGGATTTCAGACTCTGGTCGTGCTCTCTCTCTTCTGTCATCTCAATCACAGAACTCTTCCAGCCATTCATCAGGAATTCCCATGATTCACCCCCTGATCATGCCTGGCTGTCATGCCCATTATAATATAGCTCAAGTCTCTGAGAAGTTCTTGGGAGTCAGCCCCCAGGTTTCAATGAGTAGGGTGCCAAATAAGTTTCTTTCATCTGGGATGAATTCTGCAGAAGGGAATCACCTAGGTCCTATACTAATTTCTGATTGTAGTGAGCCAGTGAACTTTGAAGTGACAGATGGGATTTTCCAAGGATCAGATTTTGTAAACACTAAGGATTGTCTTCCTTGTGAAACTGGACCCACCATTGATTTGCTTCAATTGTCATCACAACTCCATCGAGTTGAGCATCAGAGGCAATCGATACATGTCAAGCAGGAAAATGATACTTTCTGCCTCCGGATAACGTGA 1674 0.4355 MGSWSYVSQEKEFVSDATDLQPNSSARSKNVFMGWELKTPCGYGNSILVSSQQVIQNQGFGEFGIPEMVRKQLPDNSIRDVSCGKGGDGIMVNSIMVSPNVFPRDDESSSKLSSSVMESNSQDSLLIDLKLGRFADHSDSQNCKPSKANPSLPSAESSTPAKRVRAVGLNSQTAFCQVHGCNKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGIHPGRAGRLLQSYNGYAGNRFQGTTLTTASFICQDILPSGLLPPEKYGMSDWCKRIKVEDGTDYSPQSTIPITNGHPHPKSLFPTFEFEKQYSSFQDNGANTGSIFSEHNSRYPHDLADANSGPHSFFQDTSLGNEDLSVFDAGSTVQALSGISDSGRALSLLSSQSQNSSSHSSGIPMIHPLIMPGCHAHYNIAQVSEKFLGVSPQVSMSRVPNKFLSSGMNSAEGNHLGPILISDCSEPVNFEVTDGIFQGSDFVNTKDCLPCETGPTIDLLQLSSQLHRVEHQRQSIHVKQENDTFCLRIT* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0488 557 MobiDBLite consensus disorder prediction 139 161 - -
Vvi17g0488 557 Pfam SBP domain 176 249 IPR004333 GO:0003677
Vvi17g0488 557 ProSiteProfiles Zinc finger SBP-type profile. 173 250 IPR004333 GO:0003677
Vvi17g0488 557 FunFam Squamosa promoter-binding-like protein 14 167 237 - -
Vvi17g0488 557 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 123 542 IPR044817 GO:0003677
Vvi17g0488 557 MobiDBLite consensus disorder prediction 138 161 - -
Vvi17g0488 557 Gene3D - 167 237 IPR036893 GO:0003677|GO:0005634
Vvi17g0488 557 SUPERFAMILY SBT domain 174 253 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0488 Vvi-Chr17 5506365 5513003 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0488 43 548 SBP-box Gene Family AT1G69170 32.742 1.60e-55 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vvi17g0488 SBP 9.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0488 - - vvi:100260293 1119.38