Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0486 ATGGGGAGAGGAAGAGTGGAGCTGAAGAGGATAGAGAACAAAATTAACAGGCAGGTGACATTTGCTAAGAGAAGGAATGGTCTTCTCAAGAAAGCTTATGAGCTCTCTGTTCTCTGTGACGCTGAGGTTGCTCTCATCGTTTTCTCTAGCCGTGGCAAACTCTATGAGTTCTGCAGCGGCCCTAGCATGGCGAAAACACTTGAGAAGTACCAAAAGTGCAGCTATGGTGCATTGGAAGCCAGCCAACCTGTCTATGAACTCACTCAGAGCAGCTATCAGGAGTATTTGAAGCTAAAGACAAGAGTGGAGGTCCTACAGCGGTCTCAGAGACACCTTCTTGGGGAAGACTTGGACCCGCTAAACACAAAGGAGCTTGAGCAGCTTGAGCATCAACTCGAGATGTCCCTGAAGCAAATTAGGTCCACAAAGACTCAAAATATGCTTGATCAACTAGCAGATCTTCAAAATAAGGAACATATGCTAATTGAAGCTAACAATGCCCTGAGAAGGAAGCTGGAAGAATCTAATGGAAAACATCCCCTTCAACAGTCATGGGAAGCGGCAGGAAACAGTGCTCTCTACAGTCGCCTTCCTGCTCAATCAGAGGGGTTTTTCCAGCCTCTGGAACGCAATTCCACATTGGAAATGGGATACAATGCTGCAGGATCCAATGAGATAACTCTTGCGGCCCCATCCCAAAATGACAATGGATTTGGCCCCGGATGGATGCTTTGGATATAA 741 0.4669 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSSRGKLYEFCSGPSMAKTLEKYQKCSYGALEASQPVYELTQSSYQEYLKLKTRVEVLQRSQRHLLGEDLDPLNTKELEQLEHQLEMSLKQIRSTKTQNMLDQLADLQNKEHMLIEANNALRRKLEESNGKHPLQQSWEAAGNSALYSRLPAQSEGFFQPLERNSTLEMGYNAAGSNEITLAAPSQNDNGFGPGWMLWI* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0486 246 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Vvi17g0486 246 Coils Coil 125 145 - -
Vvi17g0486 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi17g0486 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi17g0486 246 Pfam K-box region 89 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi17g0486 246 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vvi17g0486 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi17g0486 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi17g0486 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi17g0486 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi17g0486 246 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi17g0486 246 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Vvi17g0486 246 Coils Coil 151 174 - -
Vvi17g0486 246 FunFam MADS-box transcription factor 1 13 90 - -
Vvi17g0486 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Vvi17g0486 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0486 Vvi-Chr17 5458162 5464406 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0486 1 244 MADS-box Gene Family AT5G15800 62.357 6.80e-98 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vvi17g0486 K-box 2.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0486 K09264 - vvi:100251943 490.345