Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0485 ATGGGTAGGGGCAGGGTTCAGTTGAAGAGGATTGAGAACAAGGTAAATAGGCAGGTGACCTTTTCAAAGAGGAGGTCTGGATTGTTGAAGAAGGCTCATGAGATCTCAGTTCTTTGTGATGCAGAGGTGGCCCTGATTGTCTTCTCCACTAAGGGGAAGCTCTATGAGTACTCCACCGATTCCTGCATGGAAAGAATCCTCGAACGATATGAGAGGTATGCGTATGCACAGAGTCAGCTTATTGCCACCGATCTTGAATCACAAGGAAGCTGGACACTTGAATATGCAAAGCTCAAGGCTAGGATGGAGGTTCTACAAAAAAGCCAAAGAAATTTTATGGGAGAAGACCTTGACTCCTTGAGTCTCAAAGAGCTTCAGAATTTGGAGCAACAGCTTGATAATTCTCTTAAAAGCACAAGAACAAGAAAGAACCAACTCATGTATGAATCCCTTTCTGAGCTTCATAAAAAGGGTAAGGCGTTGCAGGAGGAACATGACTTGCTTACTGCAAAGGTGCAGGAGAAGGAGAAGGAACAGGCTGAACAGGCACAATGGAATCAGCAAAACCAGGACCTGGACTCACCATCCTTTCTTCTACAACAGCCATTGCATGCACTAAATATTAGTGGTAATTGCTTGGCAAGGGATAGTGGAGATGATCAAGGAATTCCACCTCAAAATCGAACCAATACACCCCTTCCTGCTTGGATGCTGCGCCATGTTAATAAATAG 732 0.4454 MGRGRVQLKRIENKVNRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLYEYSTDSCMERILERYERYAYAQSQLIATDLESQGSWTLEYAKLKARMEVLQKSQRNFMGEDLDSLSLKELQNLEQQLDNSLKSTRTRKNQLMYESLSELHKKGKALQEEHDLLTAKVQEKEKEQAEQAQWNQQNQDLDSPSFLLQQPLHALNISGNCLARDSGDDQGIPPQNRTNTPLPAWMLRHVNK* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0485 243 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi17g0485 243 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Vvi17g0485 243 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Vvi17g0485 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi17g0485 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi17g0485 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi17g0485 243 Coils Coil 158 190 - -
Vvi17g0485 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi17g0485 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi17g0485 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi17g0485 243 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi17g0485 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi17g0485 243 Coils Coil 122 142 - -
Vvi17g0485 243 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Vvi17g0485 243 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Vvi17g0485 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 185 - -
Vvi17g0485 243 MobiDBLite consensus disorder prediction 216 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0485 Vvi-Chr17 5434326 5452711 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0485 1 193 MADS-box Gene Family AT1G26310 61.735 2.23e-84 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vvi17g0485 K-box 6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0485 K09264 K09260 vvi:100257072 454.521