Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0483 ATGGGGGTGCGGAGGACGCAGCAAGAGAGATTCTCTGTAGATTTTGTGATGGGAGGAGGGGCAGCGGTGTTAGCAAAGAGCGCAGCAGCGCCCATTGAAAGAGTGAAGCTTTTGTTGCAGAACCAGGGGGAGATGTTGAAGAGGGGTCATCTCAAGAGGCCTTATATGGGCGTTGCTGATTGCTTTTCAAGGGTTTTCAGAGAGGAAGGAGTCTTGGCTTTTTGGAGAGGTAACCAGGCCAATGTCATCAGATATTTCCCTACCCAGGCTTTCAACTTTGCATTCAAAGGTTACTTCAAGAGCCTGTTTGGATGTTCAAAAGAGAAAGATGGATACCTAAAGTGGTTTGCTGGAAATGTAGCTTCAGGAAGTGCTGCTGGAGCAACCACTTCATTGTTTCTGTATCACTTGGATTATGCACGTACCCGACTAGCTACAGATGCGAGGGATGGTCAACGCCAGTTCAAAGGCCTATTAGATGTTTACAGTAAAACCCTGTCAACAGATGGAATTGCAGGCCTATATCGGGGATTTGGGATTTCAATCATGGGGATTACTCTATATCGAGGCATGTATTTTGGTATCTATGACACCATGAAGCCCATTGTTCTGGTGGGGCCTTTCGAGGGTAATTTCTTTGCTAGTTTCTTGTTGGGTTGGAGCATAACAACAGTTTCCGGGGTCTGTGCCTATCCCTTTGACACTCTGCGGAGGAGAATGATGCTGACCTCTGGACAACCCTTGAAGTATAGCAGTACTATGCATGCGGTTCTTGAGATTGTCCGTCTTGAGGGTTTCACTGCACTCTACCGAGGAGTCACTGCAAACATGCTTCTTGGCATGGCAGGGGCTGGAGTACTTGCAGGCTATGATCAGCTCCACCGAATTGCCTATAGACGTGGTTATGGTTTTGAGCCTCTTCAAAAGGTCTAG 933 0.4748 MGVRRTQQERFSVDFVMGGGAAVLAKSAAAPIERVKLLLQNQGEMLKRGHLKRPYMGVADCFSRVFREEGVLAFWRGNQANVIRYFPTQAFNFAFKGYFKSLFGCSKEKDGYLKWFAGNVASGSAAGATTSLFLYHLDYARTRLATDARDGQRQFKGLLDVYSKTLSTDGIAGLYRGFGISIMGITLYRGMYFGIYDTMKPIVLVGPFEGNFFASFLLGWSITTVSGVCAYPFDTLRRRMMLTSGQPLKYSSTMHAVLEIVRLEGFTALYRGVTANMLLGMAGAGVLAGYDQLHRIAYRRGYGFEPLQKV* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0483 310 PRINTS Adenine nucleotide translocator signature 55 76 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vvi17g0483 310 PRINTS Adenine nucleotide translocator signature 114 127 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vvi17g0483 310 PRINTS Adenine nucleotide translocator signature 11 23 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vvi17g0483 310 PRINTS Adenine nucleotide translocator signature 88 100 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vvi17g0483 310 PRINTS Adenine nucleotide translocator signature 215 231 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vvi17g0483 310 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 7 304 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vvi17g0483 310 ProSiteProfiles Solute carrier (Solcar) repeat profile. 114 202 IPR018108 -
Vvi17g0483 310 Pfam Mitochondrial carrier protein 115 202 IPR018108 -
Vvi17g0483 310 Pfam Mitochondrial carrier protein 9 104 IPR018108 -
Vvi17g0483 310 Pfam Mitochondrial carrier protein 211 297 IPR018108 -
Vvi17g0483 310 SUPERFAMILY Mitochondrial carrier 9 293 IPR023395 -
Vvi17g0483 310 Gene3D Mitochondrial carrier domain 12 302 IPR023395 -
Vvi17g0483 310 ProSiteProfiles Solute carrier (Solcar) repeat profile. 9 102 IPR018108 -
Vvi17g0483 310 PRINTS Mitochondrial carrier protein signature 219 241 IPR002067 GO:0055085
Vvi17g0483 310 PRINTS Mitochondrial carrier protein signature 27 41 IPR002067 GO:0055085
Vvi17g0483 310 PRINTS Mitochondrial carrier protein signature 14 27 IPR002067 GO:0055085
Vvi17g0483 310 PRINTS Mitochondrial carrier protein signature 77 97 IPR002067 GO:0055085
Vvi17g0483 310 PRINTS Mitochondrial carrier protein signature 175 193 IPR002067 GO:0055085
Vvi17g0483 310 PRINTS Mitochondrial carrier protein signature 129 147 IPR002067 GO:0055085
Vvi17g0483 310 FunFam ADP,ATP carrier protein ER-ANT1 12 302 - -
Vvi17g0483 310 ProSiteProfiles Solute carrier (Solcar) repeat profile. 210 296 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0483 Vvi-Chr17 5419711 5430168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0483 7 300 Antiporters AT5G17400 80.872 1.21e-176 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0483 K05863 - vvi:100263960 602.823