Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0467 ATGCAAGATATACATTCAATGGGTGCTGGAGGAGGCCGGATCTTTGGAGGTGACCGGAGGCTGCGGCCGCACCAGAACCAGGCCTTGAAGTGTCCGCGCTGTGAATCGCTCAACACTAAATTCTGCTACTATAACAACTACAACCTCTCTCAGCCTCGCCATTTCTGCAAGAGCTGTCGGCGGTACTGGACCAAAGGGGGCGTCCTCCGTAATGTTCCTGTTGGAGGCGGTTGCCGGAAGACCAAGCGGTCCAAGGCGAAGTCGTCATCCGACGCTCCGCGTGAGCGGAAATCGAACTCTCATTCCAGTAGCGAAAGCTCGAGCCTTACCGCTACCACCACCGCGGCGGCGACGACCGCCACGACGGAGGCGGTGTCGGCGCCCTCTTCGAACGCCGCGTCGACGTTGGTCGGTTTTCGCGAATCGAGATTTTTCGCTCCCCAAAGTCCAAACCCAAATTTTGAGATGCCGACGTTGCTGGATCACTCGTCGGACGGTAACATTTTCCCTGAGATCGGGAGCTTTACCAGCTTGATGACGGGGTCGAACGATCCAGCGGCTCTTGGATTCAATATTTCCGACATTTCACCGTTCAAATATCAAGAACAAGTTGATCAGAATCAACAGTGGCAACAGCAGCAGCAAAAGATGTCCGATGAGTTGAAGATGCAGGAGATCACCGCGGGATTTCTTGATCAGACTGTTCAGGTGGAGTTATCAGCGTTGCAGAACAGGTCAAACCATGGCGGATTCCCATCGTTGGATTGGCAGACCAGTGGTGATCAAGGTATCTTCGATCTTCCTGGAAACGTTGATCAAGGCTACTGGACTCAGAGTCAATGTGTCCTTTTTTCCCCCTTGTTGGGGTTTTCCTTTTTTCTTTCTAATGTATTTCCAATTAAATTAATCAAATATAGGAAAAATATAGAGTGTTTTGTTTGTTTGGATGCTTCCTAA 957 0.5078 MQDIHSMGAGGGRIFGGDRRLRPHQNQALKCPRCESLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSKAKSSSDAPRERKSNSHSSSESSSLTATTTAAATTATTEAVSAPSSNAASTLVGFRESRFFAPQSPNPNFEMPTLLDHSSDGNIFPEIGSFTSLMTGSNDPAALGFNISDISPFKYQEQVDQNQQWQQQQQKMSDELKMQEITAGFLDQTVQVELSALQNRSNHGGFPSLDWQTSGDQGIFDLPGNVDQGYWTQSQCVLFSPLLGFSFFLSNVFPIKLIKYRKNIECFVCLDAS* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0467 318 MobiDBLite consensus disorder prediction 1 21 - -
Vvi17g0467 318 MobiDBLite consensus disorder prediction 102 131 - -
Vvi17g0467 318 ProSiteProfiles Zinc finger Dof-type profile. 29 83 IPR003851 GO:0003677|GO:0006355
Vvi17g0467 318 MobiDBLite consensus disorder prediction 84 101 - -
Vvi17g0467 318 Coils Coil 200 220 - -
Vvi17g0467 318 ProSitePatterns Zinc finger Dof-type signature. 31 67 IPR003851 GO:0003677|GO:0006355
Vvi17g0467 318 Pfam Dof domain, zinc finger 27 83 IPR003851 GO:0003677|GO:0006355
Vvi17g0467 318 MobiDBLite consensus disorder prediction 74 131 - -
Vvi17g0467 318 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 20 217 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0467 Vvi-Chr17 5240730 5241938 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0467 18 280 C2C2-Dof Transcription Factor Family AT5G60850 41.176 1.53e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vvi17g0467 zf-Dof 7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0467 - - vvi:100262950 495.738