Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0465 ATGGGAGCAGCGACGAGGAAGAAGGTGCAGAGGAAGTTCAAGATCAGAGGTTATACCCTTAAAGTGGAAGCCCTAGACGAGATCCTTTCTTTCTTGAGCCACTTCCAAGACGCTGAAGATGAGGCCATCGATCTCCTCCTCGACGAGCTCGAAAACGAATCTTTGAAATCTTCTATATTAGATAAAGAATCAGTGCATCGGGTCGTCAGCCTCCTATTGGAGGCAGAAGCAGCAGTTGAGGAAACTCCCGGGGCCATCAGTACTCGATCTGCACTTCGCATAGTTGATGCATTCTTGATGTCTAAATTTTGTTATGATCCAATAAAAAAGATCTTCTATGAGAATACAGGGAGGCTTGCGATTCACGGTGATGCTTCTGCCAAATCTGCTTTATACAGAAATAGGTTTCTGTTGTTGTTCCAGAGGCTTTCTCGTGATCAGCACTTTTCTAAACCTGCATTCGATACTGAAATGTCTCATTTTGGAAGCTGCGAGATATCACCAATTCAGTCTTTGATTGGGCAAACGGGCAAGAGATGGGTGATGGGTGTTATATCTCAGTTGGAAGATGGCCATTTCTTCTTGGAAGATCTTACTGCATCACTTGCATTGTTGCACCAGCAATACAAAATTACAACAGGATTTTTTTCAGAGAACACAATAATTGTAGCAGAAGGTGAGATGTTCTTGGATGGTATTTTTCAGGTTAGTACATGTGGATTTCCTCCATTAGAGGACAGAGATGAATCCCTTGCATCACTTTCGGGACTTGACTTCTTTGGCGGTGGTACACTAACTAGAGAGGAAACTCTCAGACTTGCAGGACTGGAAAAAAAGGCTGTGAATGACATGTTTGTGATACTCTCTGATGTTTGGCTGGACAATGAAGAGACTATGGGAAAGCTAGCGACTGTCCTGGATGGTTACGAGAATGTGGAGGTGGTTCCTTCCCTATTTATCTTCATGGGGAATTTCTGTTCTCATCCATGTAATCTTTCCTTTCATTCTTTCTCAAGTCTTAGATTGCAGTTTGGAAAGCTTGGACAGATGATTGCATCTCATCCACGACTAAAAGAGCATAGTCAATTTCTGTTTATTCCAGGTCCTGATGATGCAGGTATATTAGTTGATTTTCCAGTGTTTCTGCTTCCCATTTTTCTCCATTTGGCCTTTGAATATTTTGTTTTTGGTTTATTCAGGTCCATCAACAGTGCTTCCTAG 1221 0.4226 MGAATRKKVQRKFKIRGYTLKVEALDEILSFLSHFQDAEDEAIDLLLDELENESLKSSILDKESVHRVVSLLLEAEAAVEETPGAISTRSALRIVDAFLMSKFCYDPIKKIFYENTGRLAIHGDASAKSALYRNRFLLLFQRLSRDQHFSKPAFDTEMSHFGSCEISPIQSLIGQTGKRWVMGVISQLEDGHFFLEDLTASLALLHQQYKITTGFFSENTIIVAEGEMFLDGIFQVSTCGFPPLEDRDESLASLSGLDFFGGGTLTREETLRLAGLEKKAVNDMFVILSDVWLDNEETMGKLATVLDGYENVEVVPSLFIFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIASHPRLKEHSQFLFIPGPDDAGILVDFPVFLLPIFLHLAFEYFVFGLFRSINSAS* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0465 406 PANTHER DNA POLYMERASE EPSILON SUBUNIT B 3 384 IPR016266 GO:0003677|GO:0006261|GO:0008622
Vvi17g0465 406 Gene3D - 3 70 - -
Vvi17g0465 406 FunFam DNA polymerase epsilon subunit 1 70 - -
Vvi17g0465 406 Pfam DNA polymerases epsilon N terminal 4 69 IPR024639 -
Vvi17g0465 406 Pfam DNA polymerase alpha/epsilon subunit B 285 372 IPR007185 GO:0003677|GO:0006260
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0465 16 387 Core DNA Replication Machinery Family AT5G22110 65.147 9.98e-170 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0465 K02325 - vvi:100257823 692.575