Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0461 ATGGAGCTTCCTCAACCCCGCCCTTTTGGAACCGAAGGTAGGAAACCAACACATGATTTTTTGTCACTGTGCAGTCATTCAACTGTTCAACAAGATCCAAGACCTTCTCAAGCAGGTTACCTAAAAACTCATGATTTCCTACAACCACTGGAACGGGGAGAGAAAAACAGCATCAAGGAAGAAAATGCAATTGAGATAAGAACTGTGGATAAACCACCACCACCAGCTCCTCCCCCAAACTCTTCAGTTGAGCACATTCTCCCGGGGGGAATTGGGACTTATAGTATAAGCCACATTTCCTATTTTAATCAAAGGCTTCCAAAGCCAGAGGGATCAATATTTACAGCAGCTCAAGCAAGTACGTCCGATAGAAACGAAGAAAATTCGAACTGTAGTTCTTATACTGGAAGTGGCTTTACATTGTGGGAAGAAACTGCAGTAAAGAAAGGAAAGGCAGGGAAGGAGAATGCAGTAGAAAGATCCATTGGAATAGAGCCGGCGGTGAAGTTGGGGCAATGGACATCGGAGCGGCCATCTCAATCCCCTTCCAACCATCGTAGCAGCTTCAGCTCTCTCTCATCCTCTCAGTCATCTGGGCAGAAGAACCAGAGCTTCATGGAGATGATACAGTCAGCTTCAGCTAAAGGTACCCAGGAAGAGGAAGAAGAAGATGAAGAGGAGTTTGTTCTTAAGAAAGAAAGCTCCTCAAACAAAGGGGATTTGACTGTGAAAGTAGATGGGAAGAGCAGTGATCAGAAGGCTGTCACGCCGCGCTCAAAACATTCCGCAACTGAACAGAGGAGGAGGAGCAAGATAAACGACAGATTTCAGATGTTGAGAGACCTTATCCCTCATAGTGACCAAAAGAGAGACAAAGCATCATTCTTATTAGAGGTCATCGAGTACATTCAGTTTTTACAAGAAAAAGTACATAAATATGAAGGTTCATTCCAAGGGTGGAACCACGAATCAGCAAAATTGATGCCATGGCGAAACAGTCACAGGCCAGCAGAAAGTTTTGCTGATCAATCTCGAGGCATAAATAGTGGGTCTGGTCCAGCATTAATGTTTTCTGCTAAGTTTGATGAGAATAATGTTGCTGTCTCCCCAAACATTTCCAGGAACACACAGAACCCTGTTGAATCTGACTTGAGTGCTTCTACTACCTTCAAAGCAATGGATCGCCACCCTGGACTAACAAACAAGGCGGTACCCATTCATATGCAGTTGCAGCCAAACATCTTCACTCCTGTTGTGGGAGGTGGTGGACTAGCCCAACTTCCGCCTAGGCTGGCACCTGATGCTGAAAATATGGCATCTCTGCCACAATCCCAGTTATGGCAGAGCAGATCATCTGTTACCACTGAGTGCACTGTTGCAAGTGATAAGTTGAAAGAGCAGGAGCTAACTATTGAAGGGGGTACCATCAGCATCTCGAGTGCATATTCCCAAGGGTTGTTGAATACTCTGACACAAGCATTGCAGAGTTCGGGAGTGGACTTGTCAAAAGCCAGCATTTCAGTGCAAATTGATTTAGGTAATAAAGCAAACAGCAGACCTACTGCCCCAACACCCATTATCAAGGATAACCAGGTTCCCTCTAGTAATCATGCCACGGCACGTTCTAGAGTTGCAAGCAGTGGTGGAGACTCTGACCAAGCCCTGAAAAGGCACAAGACTTGCAAAAACTAA 1692 0.4533 MELPQPRPFGTEGRKPTHDFLSLCSHSTVQQDPRPSQAGYLKTHDFLQPLERGEKNSIKEENAIEIRTVDKPPPPAPPPNSSVEHILPGGIGTYSISHISYFNQRLPKPEGSIFTAAQASTSDRNEENSNCSSYTGSGFTLWEETAVKKGKAGKENAVERSIGIEPAVKLGQWTSERPSQSPSNHRSSFSSLSSSQSSGQKNQSFMEMIQSASAKGTQEEEEEDEEEFVLKKESSSNKGDLTVKVDGKSSDQKAVTPRSKHSATEQRRRSKINDRFQMLRDLIPHSDQKRDKASFLLEVIEYIQFLQEKVHKYEGSFQGWNHESAKLMPWRNSHRPAESFADQSRGINSGSGPALMFSAKFDENNVAVSPNISRNTQNPVESDLSASTTFKAMDRHPGLTNKAVPIHMQLQPNIFTPVVGGGGLAQLPPRLAPDAENMASLPQSQLWQSRSSVTTECTVASDKLKEQELTIEGGTISISSAYSQGLLNTLTQALQSSGVDLSKASISVQIDLGNKANSRPTAPTPIIKDNQVPSSNHATARSRVASSGGDSDQALKRHKTCKN* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0461 563 MobiDBLite consensus disorder prediction 514 549 - -
Vvi17g0461 563 Gene3D - 254 327 IPR036638 GO:0046983
Vvi17g0461 563 MobiDBLite consensus disorder prediction 229 272 - -
Vvi17g0461 563 SMART finulus 262 312 IPR011598 GO:0046983
Vvi17g0461 563 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 11 560 IPR044295 GO:0003700|GO:0006351|GO:0046983
Vvi17g0461 563 FunFam BHLH domain class transcription factor 254 326 - -
Vvi17g0461 563 Pfam Helix-loop-helix DNA-binding domain 258 307 IPR011598 GO:0046983
Vvi17g0461 563 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 258 333 IPR036638 GO:0046983
Vvi17g0461 563 MobiDBLite consensus disorder prediction 169 272 - -
Vvi17g0461 563 MobiDBLite consensus disorder prediction 514 563 - -
Vvi17g0461 563 CDD bHLH_AtBIM_like 255 331 - -
Vvi17g0461 563 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 256 306 IPR011598 GO:0046983
Vvi17g0461 563 MobiDBLite consensus disorder prediction 173 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0461 Vvi-Chr17 5178349 5186521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0461 1 518 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 49.365 1.12e-120 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi17g0461 HLH 2.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0461 - - vvi:100243993 1066.99