Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0459 ATGGCGGAGGCAACAGACAAGAGTCCAAGACAAAGGAGCGACTCAGCGATTGAGTATAGAATTGCAATGTCGAGTGACTCGGAAACCCTAGGCTCCGATATTTCGGCAAACCAATGCCCGAAAGCCAAAGAAGCTGTGGATTTCGATTCCAACTGCTGTGGAATCTGTTTGTTAGAGGACGACAGGGCCATCAGAGGATGGGTCGATAGCTGCGACCACTACTTCTGCTTCGTTTGCATCATGGAATGGGCCAAGGTCGAGTCCCGATGTCCAATGTGCAAGCGCAGGTTCTCCACCATCCGTCGCCCGCCCAAGCCCGGTGTCTTTCCTTCCGAGCGCATTGTTAACGTGCCTGTTCGCGATCAGGCTTATCATCATTTTGGAAACGTAACAACTGGGCCTTCAGATCCTTATGCAGAAGTTGATTGTGGCATATGTCATGGTACAGCGGATGAAAGTTTTCTACTGATTTGTGATCTTTGCGACTCAGCTGCTCATACTTACTGTGTTGGCCTGGGTCACACTGTACCTGAGGGTGATTGGTTTTGCCATGATTGTACTGTTTCTAGGGCTGAACATGCCAATGGTGAAATAGATGCTGTTTTTGATGATCGGAATAATTTTAGAAACTTCTATAGAAAGCCATCAGCTGAGACGCATGTTTCTATATGTGATATTGTAGCAGAACCGTACACCCGCGAGGATGAGAGACCTCCTTCAATTGGCTCCTCACATCCAAACCGGCCGTCATCTCCCATTGCCCTAAACAGTGAAAATTTTGCTGTCAATAATAGTTCATCTATGTCAGTTGCAAGAACATTGCTCCGTTGCCGCAATGTGAATGCTCATATACAAGCATTACGTGAAAATTGGAATGCTTTGCGAAGTGGGTCCATGACATTTTCTTCTATCTTAGGTGATTCTGGAGGTGAAAGTAGTCAGAAATATAATGTTGGTGCAAGTTGTCCGAAACAAGACAACAATGCATGCTCATATGATACTGAGAAAGCATGGAAAATGATGGACAAGGCAAAATCAATTCAAAGAGCTTGTGAGAGGACTGGCATCATTCATCAGGTCTCAAAACATCCTCTGGGGAAAGTAAATGTCCCAAAAGAAGTTGCTAATGTGAAAAGCTCATCTGCAACTAATAACCGACAACTTGGAAACAAAGATTTCGGATGGCATTTCAAGCATCATTCTCTTGAAACAGATAACAAAAGATACAAACCTCAGAAGTCGGAAAATCAAGAGCAAGGTAGGGTCACTAGGACGGGGATTCCAAAATTCACTGAGAGTTCCCTAACCATTCATTCTCTAGTATCTTTTGATTCGCCATCTTCTAGGAAAGCAGAGACTTCATTTCAAGTTGATGTTCATCACAGAACTGGAGTAAGACCATCACAGAAAAATTTAGTAGACTCATTTAATGCCATTAATGAGAGAGATGGATATGGAAGCTTAATTATTCCAGATGGTCCAGTGCCCAGATCTCCCGATTTGTCTCATGCCAATCTGAAGTTTGGTGCTTCTTCCCTCTGCAAGGAAGATCTTCTTCACCGGCCAAAAGGTCGTGTGGAAATAGGAAGTGCAAAAAACAAGGCAAGAAGAGATGATGATGCCAAAAGTGAGATCCAATCTCTAGTCAAGCTCAACTTAAAGCTAATCAGCAAAGACAAACAGTTAGGAGTTGACACATTTAAGGAGGTTGCAAGGCTTGCTACTCATACCATCCTGGCAGCATGTGGATTAGAGCATTCAAAGTCGTGCGTCCGCTCCTTCCCAACCTCTATGTGCACTCATTCTGAACAGGTTCAGCAGCTCCACAAGTCCACTCTAATGCCCAGGTCTTGCAGAGAATGCTTTTATGCCTATGTAAAAGATGTTGTCAACTTCATCACAGTTGAGAAAATGGGTTCTACTGGATCATGTAGGGTCTTACCTTAG 1947 0.4402 MAEATDKSPRQRSDSAIEYRIAMSSDSETLGSDISANQCPKAKEAVDFDSNCCGICLLEDDRAIRGWVDSCDHYFCFVCIMEWAKVESRCPMCKRRFSTIRRPPKPGVFPSERIVNVPVRDQAYHHFGNVTTGPSDPYAEVDCGICHGTADESFLLICDLCDSAAHTYCVGLGHTVPEGDWFCHDCTVSRAEHANGEIDAVFDDRNNFRNFYRKPSAETHVSICDIVAEPYTREDERPPSIGSSHPNRPSSPIALNSENFAVNNSSSMSVARTLLRCRNVNAHIQALRENWNALRSGSMTFSSILGDSGGESSQKYNVGASCPKQDNNACSYDTEKAWKMMDKAKSIQRACERTGIIHQVSKHPLGKVNVPKEVANVKSSSATNNRQLGNKDFGWHFKHHSLETDNKRYKPQKSENQEQGRVTRTGIPKFTESSLTIHSLVSFDSPSSRKAETSFQVDVHHRTGVRPSQKNLVDSFNAINERDGYGSLIIPDGPVPRSPDLSHANLKFGASSLCKEDLLHRPKGRVEIGSAKNKARRDDDAKSEIQSLVKLNLKLISKDKQLGVDTFKEVARLATHTILAACGLEHSKSCVRSFPTSMCTHSEQVQQLHKSTLMPRSCRECFYAYVKDVVNFITVEKMGSTGSCRVLP* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0459 648 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 102 IPR013083 -
Vvi17g0459 648 MobiDBLite consensus disorder prediction 234 255 - -
Vvi17g0459 648 CDD RING-HC_Topors 51 97 - -
Vvi17g0459 648 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 207 IPR013083 -
Vvi17g0459 648 PANTHER F18C1.6 PROTEIN 37 637 - -
Vvi17g0459 648 SMART PHD_3 142 187 IPR001965 -
Vvi17g0459 648 SUPERFAMILY RING/U-box 47 108 - -
Vvi17g0459 648 ProSiteProfiles Zinc finger RING-type profile. 53 94 IPR001841 -
Vvi17g0459 648 ProSiteProfiles Zinc finger PHD-type profile. 140 189 IPR019787 -
Vvi17g0459 648 SUPERFAMILY FYVE/PHD zinc finger 136 189 IPR011011 -
Vvi17g0459 648 ProSitePatterns Zinc finger RING-type signature. 71 80 IPR017907 -
Vvi17g0459 648 Pfam Ring finger domain 52 94 IPR001841 -
Vvi17g0459 648 SMART ring_2 143 186 IPR001841 -
Vvi17g0459 648 SMART ring_2 53 93 IPR001841 -
Vvi17g0459 648 Pfam PHD-finger 143 188 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0459 Vvi-Chr17 5154403 5159611 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0459 129 190 C2H2 Transcription Factor Family AT3G01460 33.333 1.39e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi17g0459 PHD 4.3e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0459 - - vvi:100266325 1338.94