Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0455 ATGGCGGAAGTGTCATACCTCCTTCACCTCCACGAGGACGAAGAGGATCACGACCACGCTCCTGAGCATATCGACACCCTCGATTCTCTTCCCTATTGGGGTCTCCATGACTTCGACAGCTTCAACGTTTTTGTTTCCGATCATCCTCCCATCGCTGTCCATACCCGTGACCTGTTCCAGACCCGGCCGGAGCGTTCGCTTCATGTTCGAGCTGTAGACGACATTTCCGAGCCCGATTCCATCACCAACGTGGATCTATTGGACCGCGAAAATCAGGTGAATTTCGTTTTGAATTTGTTTCATCAGCGTGTTGAGCAGTCGCATGTAATGGGTGAGACTGATCTGGTTTCGGAAACTCTAGATGATTCGGGTTTTGGGGTTATTGAGGGAAATGACGAAACGGGTTCGACTTATTTGGACCTGGATTTAGGGCTAGGGTTCGGTGCGGAAACGAATTGTTTGGGGGTTGAGAATTGTGATTTCTTTGTGTCTAGGAGGGTTTCTGGCTCTGAATCTGGTGAGTCATCCACGGTTTCTGCGGCGGAACCGTTTGGGAGTAGTGTAGGTTATGTTGGGTTTGAATCAGATTCGGATGAGGATGGGAATGCGTTAGAGGGAATCGATCTACAAGCTGAGGATGATTTCAGGTTGGACCAAGCTCATGATGATGATACAAGTATTCGCCTTTGTTGGGATTCACTGCAGTTAGACGATCATAGGGAGACGAATGAAGATTTCGAGTGGGAGGAAGTGGATGATGTGATTGATGAGAGAGAAGTTCTAAACATGGTTCTTGGTCCTGATGAGGAGGGACCCATCCCATTATTGCCTGTAGGTGAGCCCGTAGAAGTGGATGTGGGGAGAGAAGAAAATATGGTGAGTTTGGATTGGGAAGTTCTGTTGGCTGTTGGTAATTTGGACCGGACCCTGGAAATAGAACATGATTCAGAACCTTATTTGGCTGATCATTATGACTATATTTATACATCTGAATATGACATGTTGTTTGGCCAGTTTGCAGAAAATGAGAATGCTTTGACGGGTAGGCCACCTGCTTCAAAATCTGTTGTCAAAAATCTTCCTGTTGTGGTTTTGACACAAGGAGATGTGGAGAATAATAATGCACTTTGTGCTGTTTGTAAGGATGAGATTAATGTTGGAGAACTAGCAAAGCAGTTACCTTGCAGTCACCGCTATCATGGGGATTGCATTATGCCATGGCTTGGTATACGGAATACATGCCCTGTTTGTCGTTATGAGCTGCCTACAGATGATCCTCAGTATGAGCAAAGGAGAAACCGAAGAGCTGGTGGCCAGTGA 1320 0.4644 MAEVSYLLHLHEDEEDHDHAPEHIDTLDSLPYWGLHDFDSFNVFVSDHPPIAVHTRDLFQTRPERSLHVRAVDDISEPDSITNVDLLDRENQVNFVLNLFHQRVEQSHVMGETDLVSETLDDSGFGVIEGNDETGSTYLDLDLGLGFGAETNCLGVENCDFFVSRRVSGSESGESSTVSAAEPFGSSVGYVGFESDSDEDGNALEGIDLQAEDDFRLDQAHDDDTSIRLCWDSLQLDDHRETNEDFEWEEVDDVIDEREVLNMVLGPDEEGPIPLLPVGEPVEVDVGREENMVSLDWEVLLAVGNLDRTLEIEHDSEPYLADHYDYIYTSEYDMLFGQFAENENALTGRPPASKSVVKNLPVVVLTQGDVENNNALCAVCKDEINVGELAKQLPCSHRYHGDCIMPWLGIRNTCPVCRYELPTDDPQYEQRRNRRAGGQ* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0455 439 ProSiteProfiles Zinc finger RING-type profile. 377 418 IPR001841 -
Vvi17g0455 439 SUPERFAMILY RING/U-box 356 425 - -
Vvi17g0455 439 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 246 422 - -
Vvi17g0455 439 Pfam Ring finger domain 377 418 IPR001841 -
Vvi17g0455 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 424 IPR013083 -
Vvi17g0455 439 SMART ring_2 377 417 IPR001841 -
Vvi17g0455 439 FunFam E3 ubiquitin-protein ligase RING1-like 338 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0455 Vvi-Chr17 5126464 5127783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0455 1 424 C3H Transcription Factor Family AT5G60820 36.522 9.38e-53 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0455 - - vvi:100268065 853.588