Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0454 ATGCAGACAAGTGAAAAGAGACTCCATAGCCAATCTCATGGAGACTCGTCTCATCATCTTCATGGTTGTCCTTCTGAATGTCAACTGAACATGCAGACAGACGAAGTCAAAGCACTCCACACACAAACGCATGTCCAACCAGTTCAGGATTCAAGCCATTTCAGCACATTATACTTGAATACATTTTGGGGCAACCCTCAGATTCATCTTCCGATGTTGCATGAGTTCTCCCCAAATGTATCATCTCTCAGTAATGACTCAACTTTTGATGCAAAGAAAGGGTGCCAACTGAACGCTGTGGATGAGAAGAGGCATAAGAGGCTGCAATCCAACAGGGACTCTGCTAGAAGATCGCGCCAGCGCAGGAAAAAGCAGCTTGAAGAGCTGCAGTCTCAGGTCAATCATCTCTTTGCTGTGAATCATCAGCTCACTGAAAAGCTCATCTATTTGTTGGACTGCAACAACAAGATGCTCCAAGAGAATGCCCAACTCAAACAACAAGCATCTTTCCTTCAAAAAGTTATTGCAGACAGAAAACACAGTTCAAATTTTAACTGA 558 0.4355 MQTSEKRLHSQSHGDSSHHLHGCPSECQLNMQTDEVKALHTQTHVQPVQDSSHFSTLYLNTFWGNPQIHLPMLHEFSPNVSSLSNDSTFDAKKGCQLNAVDEKRHKRLQSNRDSARRSRQRRKKQLEELQSQVNHLFAVNHQLTEKLIYLLDCNNKMLQENAQLKQQASFLQKVIADRKHSSNFN* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0454 185 Coils Coil 112 146 - -
Vvi17g0454 185 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 101 150 IPR004827 GO:0003700|GO:0006355
Vvi17g0454 185 SUPERFAMILY Leucine zipper domain 103 158 IPR046347 GO:0003700|GO:0006355
Vvi17g0454 185 Pfam bZIP transcription factor 103 161 IPR004827 GO:0003700|GO:0006355
Vvi17g0454 185 MobiDBLite consensus disorder prediction 1 20 - -
Vvi17g0454 185 Gene3D - 101 179 - -
Vvi17g0454 185 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 106 121 IPR004827 GO:0003700|GO:0006355
Vvi17g0454 185 FunFam BZIP transcription factor 101 154 - -
Vvi17g0454 185 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 33 180 IPR044521 -
Vvi17g0454 185 SMART brlzneu 99 163 IPR004827 GO:0003700|GO:0006355
Vvi17g0454 185 Coils Coil 154 174 - -
Vvi17g0454 185 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0454 Vvi-Chr17 5116982 5117539 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0454 99 185 bZIP Transcription Factor Family AT5G60830 51.087 3.59e-22 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi17g0454 bZIP_1 2.5e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0454 - - vvi:104882415 302.367