Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0448 ATGGGATGCTCATTCTCAGGACTGAATGCACTATACGATGCTGTAAATGGGGGCGGAGATGTGTGGATCAATGAGAACCGTTTCAGGATCGTGAGGCCTCTCGGCGAAGGTGGCTTCGCTTATGTTTTTCTGGTCAAAGAGGTGGTCACTGACTCATCCTCTTCAGCTTCCAAAAAATTCAAAGACCCTTCTCACGTCTCAGATGATGGCACTTATGCAATGAAGAAAGTTCTAATTCAAAATAGCGAGCAGTTGGAATTGGTGAGGGAAGAGATCCGTGTTTCCTCATTGTTCAGTCATCCCAATCTTCTTCCACTTCTTGATCATGCGATCATTGGAGTTAAGACCCCACAAGAAGGTGCTTGGAAACATGAAGCATACTTGTTATTTCCTGTTCATTTGGATGGAACATTACTGGACAATGCCAATGTTATGAAAGCCAAAAAGGAGTTCTTTTCGACCTCCGATGTTCTTCAAATATTCCGGCAGCTTTGTGCAGGGCTCAAGCATATGCACAGTCTTGAGCCTCCATATGCACATAACGATGTCAAGCCTGGTAATGTACTTTTAACACATAGAAAGGGACAACCACCTCTTGCTGTATTGATGGATTTTGGAAGTGCTCGTCCTGCAAGGAAGCAAATTCGTTCTCGTTCAGAAGCATTGCAGTTGCAGGAGTGGGCATCTGAGCACTGTTCAGCACCTTTCCGAGCTCCTGAATTGTGGGATTGTCCAAGCCATGCAGACATTGATGAACGAACTGATATTTGGTCGTTAGGGTGCACTCTGTATGCAATAATGTATGGAGTTTCTCCATTTGAGTATGCACTTGGGGAATCTGGAGGAAGTCTACAGTTGGCCATTGTAAATGCACAAATAAAGTGGCCAGCTGGTCCTAAGCCCCCATATCCAGAAGCTCTCCACCAGTTTGTGACATGGATGCTTCAGCCTCAGGCCACTGTCCGCCCTCGCATTGATGATATCATTATTCATGTTGACAAGTTAATCGCCAAGTTTTTGCATTAA 1026 0.4493 MGCSFSGLNALYDAVNGGGDVWINENRFRIVRPLGEGGFAYVFLVKEVVTDSSSSASKKFKDPSHVSDDGTYAMKKVLIQNSEQLELVREEIRVSSLFSHPNLLPLLDHAIIGVKTPQEGAWKHEAYLLFPVHLDGTLLDNANVMKAKKEFFSTSDVLQIFRQLCAGLKHMHSLEPPYAHNDVKPGNVLLTHRKGQPPLAVLMDFGSARPARKQIRSRSEALQLQEWASEHCSAPFRAPELWDCPSHADIDERTDIWSLGCTLYAIMYGVSPFEYALGESGGSLQLAIVNAQIKWPAGPKPPYPEALHQFVTWMLQPQATVRPRIDDIIIHVDKLIAKFLH* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0448 341 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 3 339 - -
Vvi17g0448 341 Pfam Protein kinase domain 32 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0448 341 ProSiteProfiles Protein kinase domain profile. 28 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0448 341 Gene3D Transferase(Phosphotransferase) domain 1 17 339 - -
Vvi17g0448 341 CDD STKc_16 27 337 - -
Vvi17g0448 341 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Vvi17g0448 341 SMART serkin_6 28 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0448 341 SUPERFAMILY Protein kinase-like (PK-like) 20 331 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0448 Vvi-Chr17 4921438 4931571 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0448 34 331 EF-hand Containing Proteins AT4G04710 23.856 4.65e-13 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Vvi17g0448 Pkinase 4.9e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0448 K08856 - vvi:100254141 694.115