Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0446 ATGGCTCAGGATACATCTTCTGGTGCTGATTCACCTAGGCGGAAGTCTGGTCTATTAAGGGATCAAGTTCAATTGGTCAAAAGGAAGGATTCTACTCGTTACGAGATAGTTCCAATCCAAAATTCTCTGTCATTTGAAAAAGGTTTCTTTATAGTGATACGTGCATGCCAGTTGCTGGCTCAAAACAATGATGGGATAATATTAGTAGGAGTAGCAGGTCCCTCTGGGGCTGGGAAGACTGTGCTTACTGAGAAGGTGCTCAACTTTATGCCCAGCATTGCTGTCATTTCCATGGACAACTACAATGATTCCAGCCGTATCATTGATGGCAACTTTGATGACCCACGCTTGACAGATTATGGCACATTGCTTGAGAATATCCATGGTTTAAAAGCAGGGAAGCCCGTTCAAGTTCCTATTTACGATTTTAAATCTAGCTCTCGCATAGGTTACAGGACAGTTGATGTTCCCAGTTCCCGCATTGTCATTATTGAAGGCATATATGCCTTGAGTGAAAGATTGCGCCCTTTGCTAGATCTTCGAGTATCTGTTACTGGTGGAGTACACTTTGACCTTGTCAAAAGGGTTTTACGGGACATTCAACGTGCTGGCCAAGAGCCTGAAGAAATAATCCATCAAATCTCTGAAACGGTATATCCTATGTACAAGGCTTTTATTGAGCCAGATCTACAAACAGCACATATAAAAATCATCAACAAATTCAATCCATTCACTGGATTTCAGAACCCCACTTATATTTTGAAGTCAACGAGGGATCTTTCAGTGGATCAAATCAAAGCTGTTCTTTCTGAAGAACACACTGAAACTACAGAGGAAACTTATGATATATATCTTCTACCGCCTGGTGAAGATCCTGAAGCATGCCAATCATATCTGAGGATGAGGAACAGGGATGGCAAATACAATCTCATGTTTGAGGAATGGGTTACAGATAGTCCGTTCATCATTTCACCAAGAATAACTTTTGAAGTTAGTGTCCGCCTTCTTGGTGGCCTGATGGCCTTGGGGTACACAATTGCAGCTATCCTGAAAAGAACCAGCCATTGCTTCTTTGATGATAAAGTGTGTATTAAAACTGATTGGCTAGAACAACTTAATCGTCGGTATGTTCAGGTGCAAGGAAAAGACCGTTTGTATGTTAAAAATGTAGCAGAGCAACTGGGTTTGGATGGTTCATATGTTCCTCGCACATATATAGAACACATTCAGCTGGAGAAGCTTGTGAATGATGTTATGGCGTTACCAGATGATTTGAAGACAAAGCTCAGTATTGATGATGATTTGGCTTCAAGCCCTAAAGAAGCACTATCCCGGGCCTCTGCAGATAGGAGAATGAAATATCTCAACCGTGATATACCACATTCATATTCAACACAAAGGGATAAGAATTTGCCTAAGCTGACCAGACTTGCAGTTAACAGTAGAAGGTTTGATGTAAGAACCCCAGATTCTCCTGCAACAGTTCCAAATCAGGGAGTCATCACTCAGCTCTCAGAACAAATTTCCACACTGAATGAGAGAATGGATGAGTTCACATCTCGCATTGAAGAGTTAAATTCCAAGTTCTCTATCAGGAAAGTTTCTGCTAGCCAACAAAACTTGGCTGTGCAGGCTGATGCCTGCAATGGCTCTGCTCCCACTTCTCTTTTCATGGCTGGCTTAGGAAATGGTTCTTTGACTGGGTCTATACTGCCTAATTCTTCCTCTTCTTCTCAATTGGCTAAAGACTCCCCTCTGATGGATGAGATATTAGTTGTTGTGCGTGGGCAACGTCAGATAATGCATCAATTAGACAATCTGAACAGTCTTCTGCATGAGTACTGGGGAGAGAGGTCACGAGAAGGAAGAACAGATAGGGCAAACAGGATGATTGACATTGAATCCATGGGCATTCCAATTATCTTATCCCTGGCAATTGGTGGTTTAGGTGTCTTCTTTTTCAAAAGTTTGTCTTCCCAAAAGTGA 1986 0.4189 MAQDTSSGADSPRRKSGLLRDQVQLVKRKDSTRYEIVPIQNSLSFEKGFFIVIRACQLLAQNNDGIILVGVAGPSGAGKTVLTEKVLNFMPSIAVISMDNYNDSSRIIDGNFDDPRLTDYGTLLENIHGLKAGKPVQVPIYDFKSSSRIGYRTVDVPSSRIVIIEGIYALSERLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRDLSVDQIKAVLSEEHTETTEETYDIYLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRTSHCFFDDKVCIKTDWLEQLNRRYVQVQGKDRLYVKNVAEQLGLDGSYVPRTYIEHIQLEKLVNDVMALPDDLKTKLSIDDDLASSPKEALSRASADRRMKYLNRDIPHSYSTQRDKNLPKLTRLAVNSRRFDVRTPDSPATVPNQGVITQLSEQISTLNERMDEFTSRIEELNSKFSIRKVSASQQNLAVQADACNGSAPTSLFMAGLGNGSLTGSILPNSSSSSQLAKDSPLMDEILVVVRGQRQIMHQLDNLNSLLHEYWGERSREGRTDRANRMIDIESMGIPIILSLAIGGLGVFFFKSLSSQK* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0446 661 CDD UMPK_like 68 240 - -
Vvi17g0446 661 PANTHER URIDINE KINASE 18 424 - -
Vvi17g0446 661 Gene3D - 67 246 IPR027417 -
Vvi17g0446 661 Gene3D - 256 414 - -
Vvi17g0446 661 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 237 IPR027417 -
Vvi17g0446 661 PRINTS Uridine kinase signature 66 83 - -
Vvi17g0446 661 PRINTS Uridine kinase signature 189 199 - -
Vvi17g0446 661 PRINTS Uridine kinase signature 133 148 - -
Vvi17g0446 661 PRINTS Uridine kinase signature 225 238 - -
Vvi17g0446 661 ProSiteProfiles CYTH domain profile. 249 411 IPR023577 -
Vvi17g0446 661 Coils Coil 501 528 - -
Vvi17g0446 661 Pfam CYTH domain 270 405 IPR023577 -
Vvi17g0446 661 Pfam Phosphoribulokinase / Uridine kinase family 69 237 IPR006083 GO:0005524|GO:0016301
Vvi17g0446 661 SUPERFAMILY CYTH-like phosphatases 261 408 IPR033469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0446 Vvi-Chr17 4890081 4903898 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0446 67 237 PRT Gene Family AT5G40870 27.778 1.04e-17 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0446 K00876 - vvi:100243884 1271.53