Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0428 ATGCCATCTGATCAGTCTCAAAATCAATGTGAAAAACTTATATCTGTACCTGCTGAAACAGAAGCTTTTCATGAGGCTGGAGAGGAAAGAAGAATGAAGCTTCCAAAAGGAGCTAATGATGTTCAAAGCAGGTTCCTTGGGGTGAGGCAAAGGCCCTCAGGAAGATGGGTTGCTGAAATCAAGGACTCCTCACATAAGCTTAGGCTATGGTTAGGGACTTTTGATAGTGCAGAAGAGGCTGCCTTCGCTTATGATAGCGCTGCTCGGATTCTGAGAGGAAGAAATGCTAAGACCAACTTCTCCTACCATGGGATCACGAATACTTACCAAGAAAATTGCAGATTACTAGGAAAAAACCCAAAGCTCTATCATCTCCTTCGGCATACCATCATGAAGAACCATGCAAGATCCTCATCTCTATACTCTGTGAATACTCCATCGAATGATCCAAATAGAGGAAATGAAGGTGAATCTCTGGATTCCAATACACTTGTTGAAGAAACTATAGTTTGTTCTTCGAGTTCAGAAGATGAGCTGGGGTGTTATGGCTTTCAAAATAGAGATAACCTTGGCGAAATCTCCTTTGGTAGTTCTAAGGTTTATTCTTCTGTTATTGTAGCTCCTTCCTTTAGTGGTTCTCTCTGCCAAGGAGGAGAAGAAAACAGTTGTCAAGAGGCAGAATCACTTTGA 690 0.4188 MPSDQSQNQCEKLISVPAETEAFHEAGEERRMKLPKGANDVQSRFLGVRQRPSGRWVAEIKDSSHKLRLWLGTFDSAEEAAFAYDSAARILRGRNAKTNFSYHGITNTYQENCRLLGKNPKLYHLLRHTIMKNHARSSSLYSVNTPSNDPNRGNEGESLDSNTLVEETIVCSSSSEDELGCYGFQNRDNLGEISFGSSKVYSSVIVAPSFSGSLCQGGEENSCQEAESL* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0428 229 MobiDBLite consensus disorder prediction 137 159 - -
Vvi17g0428 229 CDD AP2 43 100 IPR001471 GO:0003700|GO:0006355
Vvi17g0428 229 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Vvi17g0428 229 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Vvi17g0428 229 Gene3D AP2/ERF domain 43 103 IPR036955 GO:0003700|GO:0006355
Vvi17g0428 229 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Vvi17g0428 229 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Vvi17g0428 229 Pfam AP2 domain 45 93 IPR001471 GO:0003700|GO:0006355
Vvi17g0428 229 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 31 144 - -
Vvi17g0428 229 FunFam ethylene-responsive transcription factor RAP2-11 43 102 - -
Vvi17g0428 229 SUPERFAMILY DNA-binding domain 43 102 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0428 Vvi-Chr17 4720507 4721196 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0428 24 108 AP2-EREBP Transcription Factor Family AT5G19790 52.941 1.18e-25 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi17g0428 AP2 4.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0428 K09286 - vvi:104882330 454.521