Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0425 ATGGCTGGTGGGAGAAGAAAAAGGCAACACTTCGGTAGAATCCATGCCTTCTCATGTGGGAGAGCATCATTCAATGGTGAACACTCACTGATTGGAGGTCCTGGCTTCTCCAGGATAGTCTTCTGTAATGACCCAGAGTGCTTTGAGGCCGGTCAGCTCAAATATGGAGGCAACTATGTCAGAACTACAAAGTACACACTTGCAACATACTTTCCAAAAGCACTTTTTGAGCAGTTCAGGCGGGTGGCGAACATATATTTCCTCATCTGTGCAATCTTGTCTTTCACCGCCCTCTCACCTTACTCTGCTTTCAGTACTGTTTTTCCTCTTGTTGTTGTGGTGGGAGTGACAATGGGGAAGGAAGCTGTGGAAGATTGGAGGCGAAAAAGGCAGGATATTGAGATGAACAACAGGAAGGTTAAATACCATCGCGGTGATGGTGTTTTTGATTATGCTAAATGGATGGATTTGAAAGTTGGAGATGTAGTGAAAGTGGAAAAGGATGAATTTTTCCCTGCTGATCTCATATTGCTTTCATCAAGTTACGACGATGCGATTTGCTATGTTGAGACTACAAATCTTGATGGAGAAACCAATTTGAAACTAAAACAAGCACTCGATGTAACTGCAAACTTACTTGATGACTCTAGGTTTGAAAATTTCAGGGCAATCATTAAATGTGAAGATCCAAATGCAAATTTGTACTCCTTTGTTGGAAATTTGCAGCTGGAAGAACAACAGTTCCCTCTTACACCTCAGCAGCTTCTGCTAAGGGACTCAAAGCTACGAAACACAGATTATATCTATGGGGTGGTCATCTTCACAGGGCATGACACAAAGGTTATTCAAAATTCAACAGCACCTCCATCAAAGAGAAGCAAAATTGAGAGAAGAATGGATAAACTGGTTTACCTTTTGTTTTCTGCATTAGTCTTTCTGTCTTTCATTGGGTCCGTTTTCTTTGGGATTACAACTAGCGAGGACCTAGAAAATGGAGTGATGACAAGATGGTATCTGAGGCCAGATGATACTACAATTTACTATGATCCAAAAAGAGCTCCAGTTGCAGCAATTTTGCATTTTTTGACTGCCCTTATGCTGTATGGATACTTGATCCCCATTTCCTTGTATGTGTCAATAGAAATTGTGAAAGTTCTCCAGAGTGTTTTCATCAATCAGGATCCGCACATGTACTATGAGGAAGGTGACAAGCCAGCACGAGCACGTACCTCAAATTTGAATGAGGAGCTTGGCCAAGTTGATACTATACTTTCTGATAAAACAGGAACCTTGACTTGCAACTCAATGGAATTTATCAAGTGTTCTATTGCTGGGACTGCTTATGGCCGTGGAATTACAGAGGTTGAAAGGGCTCAGGCTAGGGGGAAAGAGACGCCTTTAGCTCAGGAGGTTGTAGAAGACAAGGACAATGTTGAGGAGATTACTGAAACAAAGCCTTCCATTAAAGGGTATAATTTTATTGATGAAAGGATCACAAATGGTAACTGGGTTAATGAGCCTCGCGCAGATGTCATTCAGAATTTCTTAAGGTTGCTGGCAGTCTGTCATACTGCCATACCTGAAGTGGATGATGAAACAGGGAAAATCTCCTATGAAGCTGAATCACCAGATGAGGCAGCATTTGTTATTGGAGCAAGAGAACTGGGGTTTGAATTTTATGAAAGAACTCAAACGAGCATCTCGCTGCATGAGTTGGATCCTATGTCTGGCAGAAAGGTTGCAAGGACATACAAACTTATGAACATCATAGAATTCAGTAGTGCGAGAAAGCGGATGTCTGTGATTGTAAGAAATGAGGAGGGAAGGCTGCTGCTACTTTCTAAAGGTGCTGACAGTGTCATGTTTGAGAGACTTGCTCAAGATGGAAGAGAGTTTGAAGTACAGACCAGGCTGCACATTAATGAGTATGCTGATGCTGGCTTGAGGACTTTGGTACTTGCATATCGAGAACTTGATGACGAAGAATACAATGAGTTCAACGAGGAATTCTCTCAAGCCAAGAACTTAGTCAGTGCAGATCGTGAGGAGATTATCGAGGAAGTGGCAGAAAGGATTGAGAAAGACTTGATTCTTCTTGGTGCTACTGCTGTTGAAGACAAACTCCAAAATGGGGTTCCTGAGTGCATTGACAAGCTTGCACAAGCTGGAATAAAATTGTGGGTTCTGACTGGAGATAAGATGGAGACTGCAATAAATATTGGGTTTGCCTGTAGTTTGCTTAGACAAGGAATGAAGCAAATAATAATAAATTCCGAAACTCCAGGAATTAAAGCACTGGAGAAAGCAGGGGATAAGTCTGCTGTTGATGAGGCAGCGAAGGCGAATGTCATTCAACAGATAAGTGAGGGTAAGGCACTGCTTAACATAGCAAGTGAAGACTCCGAGGCATTGGCTTTGATCATTGATGGGAAGTCACTCATTTATGCTCTGGAGGACGATGTCAAAGACATGTTTCTAGAGCTAGCCATTGGCTGTGCATCTGTTATATGCTGCCGCTCATCACCTAAACAGAAAGCACTTGTTACAAGGCTGGTTAAAGTAAAAACAGGGAGCACAACATTAGCAATTGGTGATGGGGCAAATGATGTTGGAATGCTTCAAGAAGCAGATATTGGGGTTGGTATCAGTGGGGTTGAAGGAATGCAGGCAGTTATGTCAAGTGACATCGCAATTGCACAGTTCCGGTTTTTGGAGCGCTTGCTACTTGTGCATGGACACTGGTGTTATAGAAGGATCTCGTCTATGATATGCTATTTCTTCTACAAAAACATTGCATTTGGATTTACACTCTTCTTCTTTGAAGCATATGCTTCATTCTCTGGTCAAGCTGCCTACAATGATTGGTACTTGTCGCTCTATAACGTCTTCTTCACATCACTTCCTGTGATTGCCATGGGAGTGTTTGATCAAGACGTTGCTGCGCGCTTTTGTCTCAAGTTCCCTCTGCTATACCAAGAAGGTGTACAGAATGTGCTATTCAGCTGGACCAGAATCCTTGGCTGGGCATTTAATGGGGTTTTGAGCTCCACCTTGATTTTCTTCTTCTGTGCCTGTGCAATGGAGCATCAAGCCTTCCGCAAAGGCGGGGAGGTGGTTGGCATGGAAATCTTTGGGGCAGTAATGTATACATGTGTGGTATGGGTTGTGAACTGTCAGATGGCACTCTCCATCAACTATTTCACACTAATTCAGCATGTCTTCATCTGGGGTAGCATTGTTTTTTGGTATATATTCCTCTTGGTATATGGGGCCATGGACCCCAACATCTCCACGACCGCCTACCAGGTCTTCATTGAAGCCTGTGCACCAGCTCTATCTTTCTGGCTTGTCACACTCTTTGTAACTGTTGCCACCCTCCTTCCATACTTCAGTTATGCTGCCATTCAAATGAGGTTTTTCCCCATGTATCATCAGATGATTCAATGGATAAGAAATGACGGACACTCTGAGGACCCTGAGTATTGCCAAATGGTAAGGCAGAGATCATTGCGATCCACAACAGTAGGTTATACCGCACGTTTCAGTCGCTCCAAATTGGAGCTTCCAGAGCAGATATGA 3579 0.4306 MAGGRRKRQHFGRIHAFSCGRASFNGEHSLIGGPGFSRIVFCNDPECFEAGQLKYGGNYVRTTKYTLATYFPKALFEQFRRVANIYFLICAILSFTALSPYSAFSTVFPLVVVVGVTMGKEAVEDWRRKRQDIEMNNRKVKYHRGDGVFDYAKWMDLKVGDVVKVEKDEFFPADLILLSSSYDDAICYVETTNLDGETNLKLKQALDVTANLLDDSRFENFRAIIKCEDPNANLYSFVGNLQLEEQQFPLTPQQLLLRDSKLRNTDYIYGVVIFTGHDTKVIQNSTAPPSKRSKIERRMDKLVYLLFSALVFLSFIGSVFFGITTSEDLENGVMTRWYLRPDDTTIYYDPKRAPVAAILHFLTALMLYGYLIPISLYVSIEIVKVLQSVFINQDPHMYYEEGDKPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGTAYGRGITEVERAQARGKETPLAQEVVEDKDNVEEITETKPSIKGYNFIDERITNGNWVNEPRADVIQNFLRLLAVCHTAIPEVDDETGKISYEAESPDEAAFVIGARELGFEFYERTQTSISLHELDPMSGRKVARTYKLMNIIEFSSARKRMSVIVRNEEGRLLLLSKGADSVMFERLAQDGREFEVQTRLHINEYADAGLRTLVLAYRELDDEEYNEFNEEFSQAKNLVSADREEIIEEVAERIEKDLILLGATAVEDKLQNGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQGMKQIIINSETPGIKALEKAGDKSAVDEAAKANVIQQISEGKALLNIASEDSEALALIIDGKSLIYALEDDVKDMFLELAIGCASVICCRSSPKQKALVTRLVKVKTGSTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQFRFLERLLLVHGHWCYRRISSMICYFFYKNIAFGFTLFFFEAYASFSGQAAYNDWYLSLYNVFFTSLPVIAMGVFDQDVAARFCLKFPLLYQEGVQNVLFSWTRILGWAFNGVLSSTLIFFFCACAMEHQAFRKGGEVVGMEIFGAVMYTCVVWVVNCQMALSINYFTLIQHVFIWGSIVFWYIFLLVYGAMDPNISTTAYQVFIEACAPALSFWLVTLFVTVATLLPYFSYAAIQMRFFPMYHQMIQWIRNDGHSEDPEYCQMVRQRSLRSTTVGYTARFSRSKLELPEQI* 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0425 1192 CDD P-type_ATPase_APLT_Dnf-like 57 1023 - -
Vvi17g0425 1192 FunFam Phospholipid-transporting ATPase 699 903 - -
Vvi17g0425 1192 Gene3D - 562 678 IPR023299 GO:0000166
Vvi17g0425 1192 Gene3D - 695 903 IPR023214 -
Vvi17g0425 1192 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 487 701 IPR023299 GO:0000166
Vvi17g0425 1192 Gene3D - 115 286 - -
Vvi17g0425 1192 SFLD C1.7: P-type atpase like 408 914 - -
Vvi17g0425 1192 NCBIfam phospholipid-translocating P-type ATPase 55 1148 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vvi17g0425 1192 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Vvi17g0425 1192 FunFam Phospholipid-transporting ATPase 116 286 - -
Vvi17g0425 1192 PRINTS P-type cation-transporting ATPase superfamily signature 761 771 - -
Vvi17g0425 1192 PRINTS P-type cation-transporting ATPase superfamily signature 863 882 - -
Vvi17g0425 1192 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Vvi17g0425 1192 NCBIfam HAD-IC family P-type ATPase 829 946 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi17g0425 1192 SUPERFAMILY HAD-like 419 918 IPR036412 -
Vvi17g0425 1192 Pfam Cation transport ATPase (P-type) 533 624 - -
Vvi17g0425 1192 FunFam Phospholipid-transporting ATPase 541 699 - -
Vvi17g0425 1192 Pfam Phospholipid-translocating ATPase N-terminal 40 107 IPR032631 -
Vvi17g0425 1192 Pfam Phospholipid-translocating P-type ATPase C-terminal 891 1141 IPR032630 -
Vvi17g0425 1192 SUPERFAMILY Calcium ATPase, transmembrane domain M 52 1141 IPR023298 -
Vvi17g0425 1192 SUPERFAMILY Calcium ATPase, transduction domain A 140 283 IPR008250 -
Vvi17g0425 1192 SFLD p-type atpase 408 914 IPR044492 -
Vvi17g0425 1192 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 39 1154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0425 Vvi-Chr17 4702544 4708440 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0425 1 1185 Primary Pumps ATPases AT1G68710 69.294 0.0 1788
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0425 K01530 K14802 vvi:100247431 2309.26