Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0422 ATGTTAACCGATGGAAGAATTGTTGCAGTTAAAAAGTCAAAGATAGTTGATGAAAGCCAAATAGAGCACTTTATTAATGAAATTGTGATTCTTTCACAAATCAGTCATAGGAATGTAGTTGGGCTCTTAGGGTGTTGCTTGGAGACAGAGGTACCTTTATTGGTTTATGAGTTCATTTCCAATGGAACTTTGTTCCAACATATTCACAATCAAGATAGTGACTTCCCACTTTCATGGAAAATGCGTCTACAAATTGCGATTGAGGTAGCTGGGGCACTTGCTTATTTACACTCAGCGTGTTCTATACCAATTTATCATAGAGACATCAAGTCTACAAATATACTTTTAGATGATAAACATAGAGCAAAAGTGTCAGATTTTGGAACATCAAGGTCTATTTCTATAGAGCAAACTCACTTGACTACTCTTGTACATGGGACTTTTGGTTACTTGGATCCAGAATATTTTCAATCAAGTCAATTTACTGAAAAAAGTGATGTATATAGTTTTGGAGTTGTTCTTGTTGAACTTTTAACAGGACAAAAGCCAATTTGTTCAACAAGATCACAAGAAGAGAAAAGTTTGGCAACACATTTTATTTTGTCATTACAAGAGTCTCGTCTATTTGATATTCTTGATGCTGGGGTTGTAAAGGAAGGAGAGAAAGAAGAGATCATGGCTCTTGCTTACCTTGCATATCAATGCTTAAACTTGAGTGGAAGGAAAAGGCCTACAATGAAAGAGATTACCATGGAATTAGAGCATATTAGAATGTCTCTTCCACCTTTGAAGGTTGAGCAAAATTTTGAAGAGAATGCATGCATCGAAATGGAAATAATAGGCCCTCTAGATAGTACTTCATCTTTTAGAAGGTCATGTTTGAATTACCCCAAAGCATCTTCCTCAGATGAGCAACCATTGTTATTTAACGCATTATGA 939 0.3557 MLTDGRIVAVKKSKIVDESQIEHFINEIVILSQISHRNVVGLLGCCLETEVPLLVYEFISNGTLFQHIHNQDSDFPLSWKMRLQIAIEVAGALAYLHSACSIPIYHRDIKSTNILLDDKHRAKVSDFGTSRSISIEQTHLTTLVHGTFGYLDPEYFQSSQFTEKSDVYSFGVVLVELLTGQKPICSTRSQEEKSLATHFILSLQESRLFDILDAGVVKEGEKEEIMALAYLAYQCLNLSGRKRPTMKEITMELEHIRMSLPPLKVEQNFEENACIEMEIIGPLDSTSSFRRSCLNYPKASSSDEQPLLFNAL* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0422 312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 104 116 IPR008271 GO:0004672|GO:0006468
Vvi17g0422 312 SUPERFAMILY Protein kinase-like (PK-like) 3 273 IPR011009 -
Vvi17g0422 312 Gene3D Transferase(Phosphotransferase) domain 1 59 275 - -
Vvi17g0422 312 Gene3D Phosphorylase Kinase; domain 1 1 58 - -
Vvi17g0422 312 PIRSF ILK 4 268 - -
Vvi17g0422 312 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 1 266 IPR045274 GO:0007166
Vvi17g0422 312 FunFam Wall-associated receptor kinase-like 10 1 58 - -
Vvi17g0422 312 FunFam Os04g0517700 protein 81 277 - -
Vvi17g0422 312 SMART serkin_6 1 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0422 312 Pfam Protein kinase domain 3 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0422 312 ProSiteProfiles Protein kinase domain profile. 1 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0422 Vvi-Chr17 4650027 4650965 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0422 1 272 Receptor kinase-like Gene Family AT1G69730 63.004 2.16e-125 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vvi17g0422 Pkinase 3.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0422 - - vvi:100259516 617.461