Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0419 ATGGCAAAGCCAGGCTGTGAGCAGGATCATTGCGGAGACATCCTCATTCCGTACCCGTTTGGCATGGGGAAGAGTTGCTATAAGGATGAATGGTTCTCAATCTCTTGTAGTCATTCGTTCGATCCTCCAAAACCCATTCTAAGTAAACTCAATCTGGAGGTGCTGAGTATAGAAATGGACCGCTTCCAGAAAAGTGTGATGGTTAACAGTCCCATATATTCCAACTGTGAAAATGGAGAGGTGGAGGTGACCAGTAGTCCTTGGCAAAGCAGAGATTTGTGGGGAAGCCCATTCCTTTACTCTCTTCATAACGATCTCGTGGGGGTGGGTTGTCACAATGTGCTGCTGAGAGACAGGAATGAGGAAATCATGGCAGGTTGCGCCTCCACTTGCGACAAGAGTATTACTACTAAAGTGTGCAATTATAACTTGGATATACAATTTTACAGTATCAACATTTTTCTGGTTTTAGTTGTTAGAGAATGTGCCAACTGTCGCTGGGGATGTGATGGCCGTTACAATAGCAGCACTTACAAATATGACTTCTATTGCAGCACAAAGAACAAATCAAAAGCTTTAATTCTAGGCTGCAGTATAAGTGGGGGATTATTGTTGCTACTCATTTTCAGTTTTGGGTTATATAAAGTAGTGAGAAAACAATTGGATATTAGAGTCAAAAAGCGATTCTTTAAACGAAATGGTGGGCTGTTGTTGCAACAACAAATTTCTTCTGATAAGATTGCTTTTGAGAAAACAAAAATTTTCACATCTGACGAGTTAGAGAAGGCGACTGACAACTTCAATAAGAATCGAATTCTTGGTCAAGGAGGTCAAGGAACCGTTTATAAAGATGATAAATATAAAGCAAAAGTGTCAGATTTTGGAACATCAAGGTCTATTTCCATTGATCAAACTCATTTGACTACTATTGTACAAGGGACTTTTGGCTATTTGGACCCAGAATATTTTCAATCAAGCCAATTTACTGAAAAGAGTGATGTATATAGTTTTGGAGTAGTTCTTGTTGAGCTTTTAACCGGGCAAAAGCCAATTTCATCTACAAGATCACCAGAAGAAAAAAGTTTGGCAACACATTTCATTTTATCCTTACAAGAGTCTCGTCTATTTGATATTCTTGATGCTCGAGTTGTGAAGGAAGGTCGGAAAGAGGACATCATGACATTTGCTAAGCTTGCAGGTCGATGCTTAAATTTGAATGGAAGGAAAAGACCTACGATGAAAGAAGTTACCACAGAAATAGATAACATTAGAGTGTCTGCCCTACATTTGAATGTTGATCAAAATTTCCAAGAAAATGCATGTGTTGTAACTGAAATAACAGAGTTTTTGGATATGGATGATACTTCAACTTCCAGGGGATCATGTTTAGATGACACTAAAGAATCTTCATTTGATGAAGAGTTCAACATATCATATGGAGAAGAGAAAGGGAAAAAAAGTGGATGTGAGAGAGGAAAAGAAACTAAGATTAAAAAGCACATCCTCGATCAATTAGCTATATAG 1524 0.3832 MAKPGCEQDHCGDILIPYPFGMGKSCYKDEWFSISCSHSFDPPKPILSKLNLEVLSIEMDRFQKSVMVNSPIYSNCENGEVEVTSSPWQSRDLWGSPFLYSLHNDLVGVGCHNVLLRDRNEEIMAGCASTCDKSITTKVCNYNLDIQFYSINIFLVLVVRECANCRWGCDGRYNSSTYKYDFYCSTKNKSKALILGCSISGGLLLLLIFSFGLYKVVRKQLDIRVKKRFFKRNGGLLLQQQISSDKIAFEKTKIFTSDELEKATDNFNKNRILGQGGQGTVYKDDKYKAKVSDFGTSRSISIDQTHLTTIVQGTFGYLDPEYFQSSQFTEKSDVYSFGVVLVELLTGQKPISSTRSPEEKSLATHFILSLQESRLFDILDARVVKEGRKEDIMTFAKLAGRCLNLNGRKRPTMKEVTTEIDNIRVSALHLNVDQNFQENACVVTEITEFLDMDDTSTSRGSCLDDTKESSFDEEFNISYGEEKGKKSGCERGKETKIKKHILDQLAI* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0419 507 Gene3D Transferase(Phosphotransferase) domain 1 279 445 - -
Vvi17g0419 507 FunFam Os04g0517700 protein 277 447 - -
Vvi17g0419 507 Pfam Wall-associated receptor kinase galacturonan-binding 6 61 IPR025287 GO:0030247
Vvi17g0419 507 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 284 433 IPR045274 GO:0007166
Vvi17g0419 507 SMART serkin_6 203 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0419 507 ProSiteProfiles Protein kinase domain profile. 101 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0419 507 Pfam Protein kinase domain 286 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0419 507 SUPERFAMILY Protein kinase-like (PK-like) 284 423 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0419 Vvi-Chr17 4609921 4613394 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0419 284 439 Receptor kinase-like Gene Family AT1G69730 58.974 3.31e-56 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vvi17g0419 Pkinase 3.8e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0419 - - vvi:100250718 373.629