Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0416 ATGATAGTTGAAGAAAGCCAAATAGAGCACTTCATAAATGAGATTGTGATTCTTTCACAAATCAATCATAGGAATATAGTTGGGCTCTTAGGTTGTTGCTTGGAGACAGAAGTTCCTTCATTAGTTTATGAGTACATTTCCAATGGAACCTTGTTCCAACTTATTCATAGTCAAGATACGGACTTCCCATTTTCATGGGAAATGCGGACTTTGGGTTACTTGGATCCAGAATATTTTCAAACAAGTCAATTTACTGAAAAAAGTGATGTATACAGTTTTGGAGTTGTTCTTGTCGAGCTTTTAACAGGACAAAAGCCAATTTGTTCAACAAGACCACAAGAAGAGAAAAATTTGGCAACACATTTCATTTTGTCATTACAAGAGTCTCGTCTATTTGATATTCTTGATTCTCGAGTTGTAAAGGAAGGAGGGAAAGAAGAGATCATGGCAGTTGCTTACCTTACATATCGATGCTTAAACTTGAATGGAAGGAAAATGCCTACAATGAAAGAGGTTATCACAGAATTAGAGCATATTAGAGTGTCTCCTCCATCTTTAAAGGTTGACCAAAATTTTGAAGAGAATGCATGCATCGAAATGGAAACATCAGGCCCCCTAGATAGTACTTCATCTTTCAGAAGGTCGTGTTTGAATTACAACAAAGCATCTTCCTCAGATGAGCAACCATTGTTATTTAACACATTATGA 708 0.3616 MIVEESQIEHFINEIVILSQINHRNIVGLLGCCLETEVPSLVYEYISNGTLFQLIHSQDTDFPFSWEMRTLGYLDPEYFQTSQFTEKSDVYSFGVVLVELLTGQKPICSTRPQEEKNLATHFILSLQESRLFDILDSRVVKEGGKEEIMAVAYLTYRCLNLNGRKMPTMKEVITELEHIRVSPPSLKVDQNFEENACIEMETSGPLDSTSSFRRSCLNYNKASSSDEQPLLFNTL* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0416 235 Pfam Protein tyrosine and serine/threonine kinase 72 172 IPR001245 GO:0004672|GO:0006468
Vvi17g0416 235 Pfam Protein tyrosine and serine/threonine kinase 4 63 IPR001245 GO:0004672|GO:0006468
Vvi17g0416 235 ProSiteProfiles Protein kinase domain profile. 1 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0416 235 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 69 192 IPR045274 GO:0007166
Vvi17g0416 235 Gene3D Transferase(Phosphotransferase) domain 1 50 201 - -
Vvi17g0416 235 Gene3D Phosphorylase Kinase; domain 1 2 49 - -
Vvi17g0416 235 SUPERFAMILY Protein kinase-like (PK-like) 5 189 IPR011009 -
Vvi17g0416 235 FunFam Protein kinase superfamily protein 3 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0416 Vvi-Chr17 4591496 4592395 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0416 4 195 Receptor kinase-like Gene Family AT3G25490 38.132 3.72e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vvi17g0416 PK_Tyr_Ser-Thr 3.4e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0416 - - vvi:100259516 285.804