Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0415 ATGTCTATCACCTTGTTGCTTCAGTTAATCATCTCCTTACTATGCCTAAAAGAAGCTTCAGCATCTCCATCTTTGGCAAAGCAAGGCTGTGTAGCTCACTGTGGCGATGTTTCCATTCCCTACCCGTTTGGCATCGGGACAGGTTGCTACTTCAACGATTATTTCTCAATCAACTGCAACGATTCTTCTACTCCTCCGAAGCCCTTCTTGAATCACTCTAAACTCAACCTGGAGCTGCTCAATGTATCGCTGGAATACAAAACAGTGATGGTAAACAGTCCCATAACCCCCCTATGTGGAGGTAATGGAACATGGAGAACCACTGATGTCGGTGGAAGGCCCTTCCGTTTCTCCAGGGTTCATAACATATTCATGGTGGTGGGATGTGACACCAACGCTGTCCTCATGACCGATGATCAAGAAGAAATCTTAGCGGGTTGCACATCCAATTGTAATAGCGGTATTACTAGTACTGGTACAGGTTGCTATGGCATCCAGTGTTGCCAAACCACAATTCCGTACAGTAATCAATCCACTCATCTTGGTATGTACCAAGTGAAATATATCAAGACAAGTGGGGATTGCTCATATGCCTTCTTGGGCGTTAGGGACTGGTTCGCCAACAACATCTCCAATCCAGCTATTAGTACCAATTCCGGCTATGCTCCGTTGGTCATGTTCTGGGAGATGGAAACTGGCTCATTAGGACGCTGTTACAGTCTAAATCTTGACTGGCAGTCTGAAACAGCTATCGATAGTTGCAGCTGTGTGAATAGATACGAAGGGAACCCTTATCTTCCCAATGGATGTCAAGTGGTCGAAGCTTGTGCCAACTGCAGCATTCTCGACTGTGGCATGATAGGGGCTGAATATCATTGCTTTCCCAGCAACAGAAGGGCGAAGGAGCTAAAAGCTATGATTTTAGGTCTTGGTATAGGTGGAGGGTCATTGCTTCTACTCGTTGGAAGTTTTGGACTATACAAAGGAGTCAAAAAGAGAAGGGAAATCATTCGCAAACAAAAATTCTTTAAACGAAATGGCGGTCTATTATTACAACAACAGTTATCTTCTATTGAAACTATTGAAAAAACAAAAATTTTCACATTTAAGGAGTTAGAAATGGCAACTGACAACTTCAACAAGAGTCGAATTCTTGGTCAAGGAGGTCAAGGTACAGTTTATAAAGGAATGTTAAATGATGGAAGAATTATAGCAGTTAAAAGATCAAAAATAATATATGAAAGTCAACTGGAGCAATTCATCAATGAGATTATGATTCTTTCTCAAATCAACCATAGAAATATACTTGGGTTGTTAGGATGTTGTTTAGAGACAGAAGTACCTCTATTAGTTTATGAGTTCATCTCCAATGGAACTTTATTTCAACTTATCCATGATCAAAACAATGAGTTCCCATTCTCATGGCATATGCGTTTGCAAATTGCTTCAGAGGCAGCAGGAGCTCTTGCTTACTTGCATTCATCATCTTCCATGCCCATTTATCATAGAGACATCAAGTCAACTAATATTCTTATAGATGAGAAGTATAGAGCAAAGGTTTCAGATTTTGGTACATCAAGGTCCATTTCCATTGAGCAAACTCATTTAACTACTCACGTGAAAGGGACTTTTGGTTACTTCGATCCGGAATATTTTCAATCAGGTCGATTCACTGAGAAGAGTGATGTATACAGTTTTGGAGTTGTTTTGGTTGAACTTTTAACAGGGAAAAAACCTGTTTCTTGGACAACTCTTGAAGAAGAAAAGAGTTTGGTGGCACGATTTATTTTATCATTGGAGAAGGAGAGTCATCTATATGATATTCTTGATGATCGAGTTAGGAAAGAAGGAGAGAAAGAGAGGATAATTGCAGTAGCCAACCTTGCAAAGCGGTGCTTGAACTTGAATGGCAAGAAAAGGCCGACAATGAAAGAAGTAACATTTGAGTTAGAGTATATTAGAATGTCTTCTTTGCCTATAAATTCTCAACAATATATTCTTAATGAGGATGAATACGGTATTGGGGAAAGAATGAGGCCCTTGGATAGTGCTACAACTTCTATTTCAATAGCCTCAAATTTGAGTTATAGGAAATCATATTCCTCATCATCTAATGTTCAACCATAA 2127 0.3982 MSITLLLQLIISLLCLKEASASPSLAKQGCVAHCGDVSIPYPFGIGTGCYFNDYFSINCNDSSTPPKPFLNHSKLNLELLNVSLEYKTVMVNSPITPLCGGNGTWRTTDVGGRPFRFSRVHNIFMVVGCDTNAVLMTDDQEEILAGCTSNCNSGITSTGTGCYGIQCCQTTIPYSNQSTHLGMYQVKYIKTSGDCSYAFLGVRDWFANNISNPAISTNSGYAPLVMFWEMETGSLGRCYSLNLDWQSETAIDSCSCVNRYEGNPYLPNGCQVVEACANCSILDCGMIGAEYHCFPSNRRAKELKAMILGLGIGGGSLLLLVGSFGLYKGVKKRREIIRKQKFFKRNGGLLLQQQLSSIETIEKTKIFTFKELEMATDNFNKSRILGQGGQGTVYKGMLNDGRIIAVKRSKIIYESQLEQFINEIMILSQINHRNILGLLGCCLETEVPLLVYEFISNGTLFQLIHDQNNEFPFSWHMRLQIASEAAGALAYLHSSSSMPIYHRDIKSTNILIDEKYRAKVSDFGTSRSISIEQTHLTTHVKGTFGYFDPEYFQSGRFTEKSDVYSFGVVLVELLTGKKPVSWTTLEEEKSLVARFILSLEKESHLYDILDDRVRKEGEKERIIAVANLAKRCLNLNGKKRPTMKEVTFELEYIRMSSLPINSQQYILNEDEYGIGERMRPLDSATTSISIASNLSYRKSYSSSSNVQP* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0415 708 Pfam Wall-associated kinase 160 256 IPR013695 GO:0004674|GO:0016020
Vvi17g0415 708 SUPERFAMILY Protein kinase-like (PK-like) 364 664 IPR011009 -
Vvi17g0415 708 CDD STKc_IRAK 385 651 - -
Vvi17g0415 708 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 19 657 IPR045274 GO:0007166
Vvi17g0415 708 Gene3D Transferase(Phosphotransferase) domain 1 455 669 - -
Vvi17g0415 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 500 512 IPR008271 GO:0004672|GO:0006468
Vvi17g0415 708 Gene3D Phosphorylase Kinase; domain 1 351 454 - -
Vvi17g0415 708 FunFam Wall-associated receptor kinase 2 350 454 - -
Vvi17g0415 708 Pfam Protein kinase domain 379 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0415 708 SMART serkin_6 379 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0415 708 Pfam Wall-associated receptor kinase galacturonan-binding 30 92 IPR025287 GO:0030247
Vvi17g0415 708 ProSiteProfiles Protein kinase domain profile. 379 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0415 708 FunFam Wall-associated receptor kinase 2 455 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0415 Vvi-Chr17 4578143 4582285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0415 7 656 Receptor kinase-like Gene Family AT1G16130 46.465 0.0 574
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vvi17g0415 Pkinase 5.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0415 - - vvi:100257634 1390.17