Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0414 ATGGCTGCGGTCACCTTGTTGCTTCAGTTAATAGTCTCCTTACTATGGCTAAACGAAGCTTCAGCAGCTCCATCTTTGGCAAAGCAAGGCTGTGTCGCTTATTGCGGCGATGTTTCCATTCCCTACCCGTTTGGCATCGGGAAAGATTGCTACTTCAATGATTATTTCTCAATCAACTGCAACGATTCTTCTTCTCCTCCGAAGCCCTTCTTGAATCACACTGAACTCAACCTGGAGCTGTTCAACGTATCACTGGAATACAAAACTGTGATGGTAAACAGTCCCATACCTTCCTTATGTGCAGATAACGGAACATGGAAAAGCAATGATTTTGGTGGAAGCCCCTTCCGTTTCTCCAGCGTTCATAACATATTCATGGTGGTGGGATGTGACACCAACGCAGTCCTCGCCACCGGCGATGAAATCTTAGCGGGTTGCACATCCAATTGTGATAATCGTATTGCTAGAACACGTAGACGTTGCTATGGCATAAAGTGTTGCCAAACCACAATTTCATACAATAGTCAATCCACTCACCTTGGTATGTACAATGTGAGTTATGTCAAGACAGGTGAGGGTTGCGCATATGCCTTCATGGGCGGTAGGGACTGGTACGCCAACAACAACTCTGATCCAGCTAATACTACCAATTCCGGCTATGCTCCGTTGGTCATGTTCTGGGAGATGGAAACTACTTCATTGGGAAGCTGTTACCTTCAAGATCTTGACTGGCAGTCCGGAAAAACTATCGAAATTTGCAGCTGTGAGCATAGATACGAAGGGAACCCTTATCTTCCCAATGGATGTCAAGTGGTTGAAGCTTGTGCCAACTGCAGCCTTCTTGACTGTGGCATGATAGGGACTGAATATCATTGCTTTGCCAGCAACAGAATGGCGAAGCAGCTAAAAGCTATGATTCTAGGTCTTAGTATAGGTGGAGGATCATTTCTTCTACTTGTTGGGAGTTTCGGATTGTACAAAGGAGTCAAAAAAAGAAGGGAGTTCATTCGCAAACAAAAATTCTTTAAACGAAATGGCGGTCTATTATTGCAGCAACAACTATCTTCTAGTGAAATTGTTGAAAAAACAAAAATTTTCACATCTAAGGAGTTAGAAAAAGCAACTGACAACTTCAACAAGAGCCGAATTCTTGGACATGGAGGTCAAGGTACAGTTTATAAAGGCATGTTAAATGATGGAAGAATTGTTGCAGTTAAAAGATCAAATTTAGTTGATGAAAGTCAATTAGAGCCATTCATCAATGAGATTATGATTCTTTCTCAAATCAACCATAGAAATATAGTTGGGTTGTTCGGATGTTGTTTGGAGACAGAGGTGCCTCTATTAGTTTATGAGTTCATCTCCAATGGATCCTTACTCCAACTCATCCATGATCAAAACAATGAATTCCCATTCTCATGGAGCATGCGTTTGCAAATTGCAGTAGATGCAGCAGGAGCACTAGCTTACTTGCATTCATCATCTTCCGTACCCATTTATCATAGAGACATCAAGTCAAGTAATATTCTTATAGATGAAAAGTATAGAGCAATAGTGTCAGATTTTGGGACATCAAGGTCCATTTCCATTGATCAAACTCACTTGACTACCCACGTGCAAGGGACTTTTGGTTACTTAGATCCTGAATATTTTCAATCAAGTCAATTCACTGATAAGAGTGACGTATATAGTTTTGGAGTTGTTTTGGTTGAACTTTTAACAGGGAAAAAGCCGGTTGCTTGGTCAAGTTCTGAAGAAGAAAAGAGTTTGGTGGTACATTTTATTTTATCATTGGAGGAGAATCACCTATATGATATTCTTGATGATCGAGTTAGGAAGGAAGGTGAGAAAGAGAAAATTATGGCAATGGCCAACCTTGCAAAGCGGTGCTTGAACTTGAGTGGCAAGAAAAGGCCTACAATGAAAGAAGTGACGTTTGAGTTAGAGCGTATTAGAATGTCTTCTTTGCCGATAAATTCTCAACAAGATATTCTTGATGAGGATAAATACGGTATAGTGGATGAATACGGTATAGTGGAAACAATGGGGCCTTTGGATGGTGCTACAACTTCGATTTCAATAGCCTCAAATTTGAGTTGTGGGAAATCATTTTCCTCATCTGATTCTCAACCATTTATGTATAACATAAGATGA 2154 0.4062 MAAVTLLLQLIVSLLWLNEASAAPSLAKQGCVAYCGDVSIPYPFGIGKDCYFNDYFSINCNDSSSPPKPFLNHTELNLELFNVSLEYKTVMVNSPIPSLCADNGTWKSNDFGGSPFRFSSVHNIFMVVGCDTNAVLATGDEILAGCTSNCDNRIARTRRRCYGIKCCQTTISYNSQSTHLGMYNVSYVKTGEGCAYAFMGGRDWYANNNSDPANTTNSGYAPLVMFWEMETTSLGSCYLQDLDWQSGKTIEICSCEHRYEGNPYLPNGCQVVEACANCSLLDCGMIGTEYHCFASNRMAKQLKAMILGLSIGGGSFLLLVGSFGLYKGVKKRREFIRKQKFFKRNGGLLLQQQLSSSEIVEKTKIFTSKELEKATDNFNKSRILGHGGQGTVYKGMLNDGRIVAVKRSNLVDESQLEPFINEIMILSQINHRNIVGLFGCCLETEVPLLVYEFISNGSLLQLIHDQNNEFPFSWSMRLQIAVDAAGALAYLHSSSSVPIYHRDIKSSNILIDEKYRAIVSDFGTSRSISIDQTHLTTHVQGTFGYLDPEYFQSSQFTDKSDVYSFGVVLVELLTGKKPVAWSSSEEEKSLVVHFILSLEENHLYDILDDRVRKEGEKEKIMAMANLAKRCLNLSGKKRPTMKEVTFELERIRMSSLPINSQQDILDEDKYGIVDEYGIVETMGPLDGATTSISIASNLSCGKSFSSSDSQPFMYNIR* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0414 717 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 20 655 IPR045274 GO:0007166
Vvi17g0414 717 SMART serkin_6 378 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0414 717 ProSiteProfiles Protein kinase domain profile. 378 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0414 717 Pfam Wall-associated kinase 160 256 IPR013695 GO:0004674|GO:0016020
Vvi17g0414 717 Gene3D Transferase(Phosphotransferase) domain 1 454 670 - -
Vvi17g0414 717 FunFam Wall-associated receptor kinase 2 349 453 - -
Vvi17g0414 717 CDD STKc_IRAK 384 651 - -
Vvi17g0414 717 ProSitePatterns Serine/Threonine protein kinases active-site signature. 499 511 IPR008271 GO:0004672|GO:0006468
Vvi17g0414 717 Pfam Protein kinase domain 378 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0414 717 Gene3D Phosphorylase Kinase; domain 1 344 453 - -
Vvi17g0414 717 FunFam Wall-associated receptor kinase 2 454 670 - -
Vvi17g0414 717 Pfam Wall-associated receptor kinase galacturonan-binding 31 93 IPR025287 GO:0030247
Vvi17g0414 717 SUPERFAMILY Protein kinase-like (PK-like) 356 649 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0414 Vvi-Chr17 4571391 4575352 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0414 8 654 Receptor kinase-like Gene Family AT1G16130 47.688 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vvi17g0414 Pkinase 4.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0414 - - vvi:100252503 1418.68