Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0413 ATGATTGGGTCACTGTTGCTCCATCTCATCTCGATACTATGCTTGACACAAGCATCGGCAGCTGCTCCATCTTCGGCTAAACCAGGCTGCGAAGATCGCTGCGGAAACTACTCCATCCCCTACCCTTTCGGCGTAGGCAAGGACTGCTACTATAACGAATGGTTCGCCATCAGCTGCAACAGTTCTTCTTCTTTCCCAACACCCCTCTTGAGTCATCCGAGGATCAATCTGGAGGTGCAGCAGATTTCAGTGGAATACCAAACTGTTTCAGTTCAAACTCCCATGCCTGCCTACTGCCAAAACCAGGAGGAGACCAACCGGACGTGGGACAGCATCGACTTGAAAGAAACCCCCTTCTTTTTCTCTGCAGAACGCAATAGTTTGAGGGTGATAGGGTGTGGGAACGCTGTCCTCGTCACCCGCAGTGGGGTTACCTTGGCGGGCTGCTCGTCCTTTTGCCAGAATACAAGTAACAATTTTGTTGGTAATGGTGGTTGCTTTGGCATCAACTGCTGCCAAGCCACAATCCCATCTAACCTCAATTTTTTCCGTCTAAATACTACTGCTACTTCTTATTTGAGCAGTGAGTCGCCTTGTACGTTTGCTGCCTTGGGAAACGGATTCTCAACGGATCAAGCCTCTCCCCAGCAATCTTGGGCTTCAATCGAACTGACCTGGATGATAGAAGAAGCAGTAGAGGGCAGTCAGTGTCAGAAGAACACATTGAACGGAGCGGAAGTGGGAAATTATACTTACTACAATTGCTCCTGTCTGCCTTACGAGGAAGGCAACCCTTATCGACCCCATGCTTGTCAAGTTCCGGAAGTATGCAAGAACTGCGCCGAATGTCGCAAGGAAGCCGATGGCAGTTTCTCTTGCGTGGTTAGAGGTTCAACTTCAACTTCATCCACTTCTCCAAAGCCTTTGATTCTAGGTCTCAGCTTTGGGATAGGAGGATCGGTATTTCTAATTATTGGTTCATGCTGGTTGTATAAATTTATAAAGAAACAAAGGGTTATCAAGCGCAAAGAACATTTCTTTAAACGAAATGGTGGTTTATTGTTGCAACAAGAAATGTCTTCGGATAGGATTGCTGTTGAGAAGACAAAAATTTTCTCTTCAGAAGAATTGGCAATAGCAACGGAAAACTTCAACAAGAATCGAATTCTTGGGCAAGGAGGACAAGGAACTGTATATAAAGGTATGTTAATTGATGGAAAAATCGTGGCTATTAAAAAATCAAAGATAGTTGATGAAGACCAATTGGAGCAATTCATTAATGAGATTATGATTTTATCACAAATAAATCATAGAAATATAATGAAGTTATTGGGTTGTTGCTTAGAAACCGAGGTTCCTCTATTAGTGTTTGAGTTCATCTCTAATGGAACTCTCTTCCAGCTTATCCATGATAAGAACAATGAATTTCCATTTTCATGGGAGATGCGATTGCAAATAGCAGCTGAAGTTGCCGATGCAATTACATATTTGCATTCAGCATCTTCCGTACCCATATATCATAGAGATATTAAGTCTTCAAACATACTTTTAGATGATAAATATAAAGCAAAAGTATCTGATTTTGGAATATCAAGGTCGGTCTCTTTAGGTCAAACCCACTTGACCACCCTCGTACAAGGAACCTTTGGCTACTTAGATCCAGAATATTTTGTAACAAATCACTTTACTGAAAAAAGTGATGTCTATAGTTTTGGCGTTGTCCTTGTTGAATTGTTAACCGGTCAGAAGCCAATTCCTTCAACAAGATCGGAAGAAGAAAGAAGCTTGGTTGCATATTTTACATCGTCACTGGAACAAGGTCGTCTATTCGATATCATTGATAATCGTGTTATGAAGGAGGGAGGAAAAGATGAGATCTTAGCCGTTGCTAACCTTGCAAGTCGATGCTTGCACTTCAAAGGAAAGGAAAGACCCACCATGAAAGAAGTAACAAAGGAGTTAGAACATTTCAGAACATCTTTTCTACCTTTCAGTCATGTACCACAAAATATCCACAAGGGTGAATCCATGGTAACTGAAATGACGGGGCCTTTGGATAGCACTTCTACATCGACAGAATGGTTTCAGCATGACAAGAAATCATCTTCATATGATGTATAG 2121 0.4206 MIGSLLLHLISILCLTQASAAAPSSAKPGCEDRCGNYSIPYPFGVGKDCYYNEWFAISCNSSSSFPTPLLSHPRINLEVQQISVEYQTVSVQTPMPAYCQNQEETNRTWDSIDLKETPFFFSAERNSLRVIGCGNAVLVTRSGVTLAGCSSFCQNTSNNFVGNGGCFGINCCQATIPSNLNFFRLNTTATSYLSSESPCTFAALGNGFSTDQASPQQSWASIELTWMIEEAVEGSQCQKNTLNGAEVGNYTYYNCSCLPYEEGNPYRPHACQVPEVCKNCAECRKEADGSFSCVVRGSTSTSSTSPKPLILGLSFGIGGSVFLIIGSCWLYKFIKKQRVIKRKEHFFKRNGGLLLQQEMSSDRIAVEKTKIFSSEELAIATENFNKNRILGQGGQGTVYKGMLIDGKIVAIKKSKIVDEDQLEQFINEIMILSQINHRNIMKLLGCCLETEVPLLVFEFISNGTLFQLIHDKNNEFPFSWEMRLQIAAEVADAITYLHSASSVPIYHRDIKSSNILLDDKYKAKVSDFGISRSVSLGQTHLTTLVQGTFGYLDPEYFVTNHFTEKSDVYSFGVVLVELLTGQKPIPSTRSEEERSLVAYFTSSLEQGRLFDIIDNRVMKEGGKDEILAVANLASRCLHFKGKERPTMKEVTKELEHFRTSFLPFSHVPQNIHKGESMVTEMTGPLDSTSTSTEWFQHDKKSSSYDV* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0413 706 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 18 658 IPR045274 GO:0007166
Vvi17g0413 706 SUPERFAMILY Protein kinase-like (PK-like) 362 655 IPR011009 -
Vvi17g0413 706 Pfam Protein kinase domain 384 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0413 706 Gene3D Phosphorylase Kinase; domain 1 355 459 - -
Vvi17g0413 706 CDD STKc_IRAK 390 655 - -
Vvi17g0413 706 MobiDBLite consensus disorder prediction 682 697 - -
Vvi17g0413 706 ProSiteProfiles Protein kinase domain profile. 384 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0413 706 MobiDBLite consensus disorder prediction 682 706 - -
Vvi17g0413 706 Gene3D Transferase(Phosphotransferase) domain 1 460 663 - -
Vvi17g0413 706 ProSitePatterns Serine/Threonine protein kinases active-site signature. 505 517 IPR008271 GO:0004672|GO:0006468
Vvi17g0413 706 FunFam Wall-associated receptor kinase 2 354 459 - -
Vvi17g0413 706 Pfam Wall-associated receptor kinase galacturonan-binding 30 91 IPR025287 GO:0030247
Vvi17g0413 706 SMART serkin_6 384 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0413 706 FunFam Wall-associated receptor kinase 2 460 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0413 Vvi-Chr17 4566359 4568980 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0413 5 659 Receptor kinase-like Gene Family AT1G16260 45.147 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vvi17g0413 Pkinase 1.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0413 - - vvi:100247390 1406.35