Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0412 ATGGAACCTATGGATATAGTCGGGAAGTCCAAAGAGGATGCTTCTCTGCCAAAAGCTACTATGACAAAAATTATCAAGGAGATGTTGCCCCCAGATGTACGTGTTGCAAGAGATGCTCAAGACCTTCTGATTGAATGTTGTGTAGAGTTTATTAATCTCATCTCCTCAGAGTCCAATGACGTCTGTAGCAGAGAAGAAAAAAGAACCATTGCACCTGAGCATGTTCTCAAGGCTTTAGAGGTTCTTGGATTTGGGGAGTACATTGAGGAGGTGTATGCTGCATATGAACAACACAAGCTTGAAACTATGGACACCATAAAAGGTGGGAAGTGGAGCAATGGAGCGGAAATGACCGAGGAAGAAGCATTGGCAGAGCAGCAGAGGATGTTTGCTGAGGCACGCGCAAGAATGAATGGTGGGGCCTCTATCCAAAAACAATCAGAACTTGACCCAAGTTTGGAGAGCTAA 468 0.4466 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNDVCSREEKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMDTIKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGGASIQKQSELDPSLES* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0412 155 Gene3D Histone, subunit A 4 145 IPR009072 GO:0046982
Vvi17g0412 155 PANTHER PROTEIN DR1 HOMOLOG 1 154 IPR044255 -
Vvi17g0412 155 MobiDBLite consensus disorder prediction 140 155 - -
Vvi17g0412 155 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Vvi17g0412 155 SUPERFAMILY Histone-fold 12 140 IPR009072 GO:0046982
Vvi17g0412 155 MobiDBLite consensus disorder prediction 135 155 - -
Vvi17g0412 155 FunFam Negative cofactor 2 beta 6 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0412 Vvi-Chr17 4555151 4563055 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0412 1 143 CCAAT-DR1 Transcription Factor Family AT5G23090 87.500 2.13e-92 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vvi17g0412 CBFD_NFYB_HMF 1e-21 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0412 K21751 - vvi:100242295 306.605