Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0408 ATGGCTACTGCAGAAGAAGCAAAGCCTCACACTTCAACTGAAGAGGATCAAGCGAAGAAGAAGAAGCGAAAGAGAAGTAGACCTAAGAAGATGCCGAAGGAGTCAGAGCCAGCACCCTCTGATACCGCTAACAATGACGAAGATTCTACACCAGAAGAAGAAGAGGCAGTTGCGGAAGACAGAGAAGAGGAAGTTGCAGAGGAGAGGGAAGCGGTTGAGTCCCTCAAGGAGAAGAAGAAGGCGAAGAAGAGCGGTTCTGGAATCATGAGTACCGAGGCGTTCTCGGCTTTGGGTTTGTCTGAGCCCACCATGAAGGCGATTAATGACATGGGCTTCGGGAACATGACTCAGATTCAAGCCCGAGCAATCCCACCACTTTTGTTGGGAAAAGATGTTCTTGGAGCTGCAAGGACAGGTTCTGGAAAGACCCTTGCATTTTTAATACCAGCAGTGGAGTTGTTATATCACATTAGTTTTATGCCACGGAATGGGACAGGTGTTGTTGTGATTTGCCCTACAAGGGAGCTTGCTATTCAGACTCATGCAGTGGCAAAGGACCTTCTCAAGTATCATACACAGACTCTTGGCTTGGTAATCGGTGGCTCAGCTAGAAGGGGAGAAGCAGAACGCCTTGCAAAAGGTGCAAATCTATTAGTAGCAACTCCTGGCCGACTTCTTGACCACCTTCAAAATACCAAGGGATTCATATATAAAAACTTGAAGTGCCTCATTATTGATGAGGCTGACAGGATATTGGAAGCGAACTTCGAGGAAGAAATGAAGCAAATTATTAAGCTTCTACCAAAGGAGAGGCAAACTGCTCTTTTCTCAGCCACCCAGACTAAGAAGGTTGAGGATCTTGCACGCTTATCATTCCAGACAACACCTGTCTATATTGATGTGGATGATGGGAGGACAAAGGTCACTAATGAAGGGCTGCAGCAAGGGTATTGTGTTGTGCCAAGTGCCAAGAGATTCGTTCTTTTGTATTCCTTCTTGAAGAGGAATCTGTCAAAGAAAGTGATGGTTTTCTTCTCTTCATGTAACTCGGTGAAGTACCATTCAGAACTTCTCAGATACATTCAGGTGGATTGCCTTGATATTCATGGGAAGCAAAAGCAGCAGAAGCGGACATCCACCTTCTTTGACTTCTGTAAAGCCGAGAAAGGCATCTTGTTATGTACTGATGTTGCTGCTCGTGGTCTTGACATTCCCGATGTGGACTGGATAGTGCAGTATGACCCTCCAGATGAGCCCAAGGAATACATCCATAGAGTTGGTCGAACAGCTCGTGGGGAGGGTAAAAAGGGAAATGCCCTGCTTTTTCTGATTCCAGAAGAGTTGCAATTTCTTCGCTATCTTAAGGCTGCAAAGGTACCTGTTAAAGAGTATGAATATGATGTAAAGAAACTGGCTAATGTGCAATCTCACCTGGAAAAGTTGGTGAGCAACAACTATTATTTGAACAAGTCTGCTAAAGATGCATATAGATCTTATATATTGGCATATAATTCACATTCTATGAAGGATATCTTCAATGTTCACCGCCTTGATCTTCAGGCGGTTGCTAGTTCATTCTGCTTTTCTTCGCCGCCAAAGGTAAATCTAAGCATAGACAGCAGTGCATCTAAGTTTAGAAAGAAGACGCATAAGGTTGAAGGAAGCCGGAATGGATTCAGCGAAAGCAACCCTTATGGAAGGCAAAGAGGTCAAGATGATAAGAGACAATTTGTGAGGTATTAA 1743 0.4435 MATAEEAKPHTSTEEDQAKKKKRKRSRPKKMPKESEPAPSDTANNDEDSTPEEEEAVAEDREEEVAEEREAVESLKEKKKAKKSGSGIMSTEAFSALGLSEPTMKAINDMGFGNMTQIQARAIPPLLLGKDVLGAARTGSGKTLAFLIPAVELLYHISFMPRNGTGVVVICPTRELAIQTHAVAKDLLKYHTQTLGLVIGGSARRGEAERLAKGANLLVATPGRLLDHLQNTKGFIYKNLKCLIIDEADRILEANFEEEMKQIIKLLPKERQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFVLLYSFLKRNLSKKVMVFFSSCNSVKYHSELLRYIQVDCLDIHGKQKQQKRTSTFFDFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGKKGNALLFLIPEELQFLRYLKAAKVPVKEYEYDVKKLANVQSHLEKLVSNNYYLNKSAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVASSFCFSSPPKVNLSIDSSASKFRKKTHKVEGSRNGFSESNPYGRQRGQDDKRQFVRY* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0408 580 MobiDBLite consensus disorder prediction 547 580 - -
Vvi17g0408 580 Pfam Domain of unknown function (DUF4217) 474 534 IPR025313 -
Vvi17g0408 580 Pfam Helicase conserved C-terminal domain 328 432 IPR001650 -
Vvi17g0408 580 Gene3D - 309 552 IPR027417 -
Vvi17g0408 580 CDD DEADc_DDX18 103 300 IPR044773 GO:0003724|GO:0005524
Vvi17g0408 580 MobiDBLite consensus disorder prediction 46 67 - -
Vvi17g0408 580 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 454 IPR027417 -
Vvi17g0408 580 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 244 252 IPR000629 -
Vvi17g0408 580 SMART DUF4217_3 473 536 IPR025313 -
Vvi17g0408 580 SMART helicmild6 352 433 IPR001650 -
Vvi17g0408 580 SMART ultradead3 111 316 IPR014001 -
Vvi17g0408 580 MobiDBLite consensus disorder prediction 1 21 - -
Vvi17g0408 580 Gene3D - 38 302 IPR027417 -
Vvi17g0408 580 MobiDBLite consensus disorder prediction 68 85 - -
Vvi17g0408 580 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 123 298 IPR014001 -
Vvi17g0408 580 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 325 472 IPR001650 -
Vvi17g0408 580 CDD SF2_C_DEAD 313 443 - -
Vvi17g0408 580 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 92 120 IPR014014 GO:0003724
Vvi17g0408 580 MobiDBLite consensus disorder prediction 1 87 - -
Vvi17g0408 580 Pfam DEAD/DEAH box helicase 116 287 IPR011545 GO:0003676|GO:0005524
Vvi17g0408 580 FunFam RNA helicase 309 539 - -
Vvi17g0408 580 PANTHER RNA HELICASE 27 480 - -
Vvi17g0408 580 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0408 Vvi-Chr17 4528927 4537581 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0408 74 452 Eukaryotic Initiation Factors Gene Family AT3G19760 28.158 2.14e-48 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0408 K13179 - vvi:100242258 1069.3